Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G64520 - ( RPN12a (Regulatory Particle non-ATPase 12a) peptidase )
61 Proteins interacs with AT1G64520| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G48750
   | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0331
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT3G54180
| ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0071
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
| AT3G52450
| Experimentaltwo hybridReconstituted ComplexAffinity Capture-Westernbiochemicalin vitroaffinity technology | FSW = 0.0150
| Unknown | PUB22 (PLANT U-BOX 22) UBIQUITIN-PROTEIN LIGASE |
| AT2G35930
| Experimentaltwo hybridReconstituted Complexbiochemicalin vitro | FSW = 0.0146
| Unknown | PUB23 (PLANT U-BOX 23) UBIQUITIN-PROTEIN LIGASE |
| AT3G22630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.3139
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT4G14800
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationinteraction prediction | FSW = 0.2974
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G07510
| PredictedAffinity Capture-MS | FSW = 0.0096
| Unknown | FTSH10 (FTSH PROTEASE 10) ATP BINDING / ATPASE/ METALLOENDOPEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / ZINC ION BINDING |
| AT5G56030
| Predictedsynthetic growth defectDosage Growth Defect | FSW = 0.0513
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
| AT1G45000
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4354
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
| AT5G52640
| Predictedsynthetic growth defectDosage Growth Defect | FSW = 0.0200
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT1G75990
| PredictedAffinity Capture-MSAffinity Capture-MSinterologs mappingtwo hybridAffinity Capture-MStwo hybridAffinity Capture-MSinterologs mappingSynthetic Lethality | FSW = 0.4302
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
| AT1G20200
| Predictedtwo hybridinterologs mappingAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingSynthetic Lethalitytwo hybridinteraction predictionCo-expression | FSW = 0.4209
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
| AT1G04810
| PredictedSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethalityinteraction prediction | FSW = 0.4635
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT2G20580
| PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4493
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
| AT1G47250
| PredictedAffinity Capture-MStwo hybridAffinity Capture-MSCo-expression | FSW = 0.1473
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G53750
| PredictedSynthetic LethalitySynthetic LethalityCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSinteraction prediction | FSW = 0.4009
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
| AT5G19990
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2911
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT5G42790
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinteraction predictionCo-expression | FSW = 0.2748
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT2G20140
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5207
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
| AT4G24820
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4831
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
| AT3G57290
| PredictedSynthetic LethalityAffinity Capture-Westerninterologs mapping | FSW = 0.0706
| Unknown | EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR |
| AT1G09100
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4561
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
| AT3G05530
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4646
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
| AT3G54280
| PredictedAffinity Capture-MS | FSW = 0.0194
| Unknown | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT1G65700
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0069
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G22200
| PredictedAffinity Capture-MS | FSW = 0.0515
| Unknown | UNKNOWN PROTEIN |
| AT1G16190
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2310
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT1G16470
| PredictedAffinity Capture-Western | FSW = 0.1719
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT5G58290
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3937
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
| AT1G77140
| PredictedAffinity Capture-MS | FSW = 0.0471
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
| AT5G38470
| PredictedAffinity Capture-MS | FSW = 0.1606
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT4G19006
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5067
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
| AT1G29150
| PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3431
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
| AT1G31970
| PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT1G50030
| PredictedAffinity Capture-MS | FSW = 0.0049
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
| AT1G10520
| PredictedAffinity Capture-MS | FSW = 0.2684
| Unknown | DNA POLYMERASE LAMBDA (POLL) |
| AT1G49490
| PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
| AT1G51710
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2944
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
| AT1G79210
| PredictedAffinity Capture-Western | FSW = 0.0837
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
| AT2G32730
| PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-WesternAffinity Capture-MSSynthetic Lethality | FSW = 0.3732
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT3G11270
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4593
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
| AT3G13235
| PredictedAffinity Capture-Western | FSW = 0.1059
| Unknown | UBIQUITIN FAMILY PROTEIN |
| AT4G29040
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4615
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
| AT4G38630
| Predictedinteraction predictionSynthetic Lethalityinterologs mappingco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationinterologs mappingSynthetic LethalityReconstituted Complexinteraction predictionCo-expression | FSW = 0.2675
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
| AT5G09900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.4446
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
| AT5G23540
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.5124
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT1G69070
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0083
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
| AT2G03430
| PredictedAffinity Capture-MS | FSW = 0.4421
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
| AT3G02820
| PredictedAffinity Capture-MS | FSW = 0.0221
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
| AT4G10320
| PredictedAffinity Capture-MS | FSW = 0.0252
| Unknown | ISOLEUCYL-TRNA SYNTHETASE PUTATIVE / ISOLEUCINE--TRNA LIGASE PUTATIVE |
| AT5G06160
| PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G41190
| Predictedtwo hybrid | FSW = 0.0144
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT5G43010
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4369
| Unknown | RPT4A ATPASE |
| AT1G65650
| Predictedsynthetic growth defectAffinity Capture-MSin vitroin vivotwo hybridCo-expression | FSW = 0.1324
| Unknown | UCH2 UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT3G21280
| PredictedSynthetic Lethality | FSW = 0.1336
| Unknown | UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT5G05560
| Predictedsynthetic growth defect | FSW = 0.0277
| Unknown | EMB2771 (EMBRYO DEFECTIVE 2771) UBIQUITIN-PROTEIN LIGASE |
| AT1G64750
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3684
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
| AT1G12040
| PredictedAffinity Capture-MS | FSW = 0.0241
| Unknown | LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CELL WALL |
| AT1G80710
| Predictedtwo hybrid | FSW = 0.0027
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G19020
| Predictedinteraction prediction | FSW = 0.0326
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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