Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G64550 - ( ATGCN3 transporter )
45 Proteins interacs with AT1G64550Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78900 | PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G64790 | Predictedinteraction predictiontwo hybridtwo hybridPhenotypic SuppressionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic SuppressionCo-expression | FSW = 0.1269
| Unknown | BINDING |
AT4G17140 | PredictedAffinity Capture-MS | FSW = 0.0934
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PLECKSTRIN HOMOLOGY (INTERPROIPR001849) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHOSPHOINOSITIDE BINDING (TAIRAT1G480902) HAS 1924 BLAST HITS TO 1182 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 16 METAZOA - 911 FUNGI - 304 PLANTS - 271 VIRUSES - 0 OTHER EUKARYOTES - 422 (SOURCE NCBI BLINK) |
AT4G37930 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0457
| Unknown | SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1) GLYCINE HYDROXYMETHYLTRANSFERASE/ POLY(U) BINDING |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0551
| Unknown | DNA HELICASE PUTATIVE |
AT4G30580 | PredictedAffinity Capture-MS | FSW = 0.0674
| Unknown | ATS2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE/ ACYLTRANSFERASE |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0503
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT1G24610 | PredictedAffinity Capture-MS | FSW = 0.0667
| Unknown | SET DOMAIN-CONTAINING PROTEIN |
AT1G48090 | PredictedAffinity Capture-MS | FSW = 0.0934
| Unknown | PHOSPHOINOSITIDE BINDING |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0660
| Unknown | DNA HELICASE-RELATED |
AT5G63680 | Predictedpull down | FSW = 0.0440
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G60790 | PredictedPhylogenetic profile method | FSW = 0.0101
| Unknown | ATGCN1 TRANSPORTER |
AT1G20970 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT5G19180 | PredictedPhenotypic Enhancement | FSW = 0.0119
| Unknown | ECR1 (E1 C-TERMINAL RELATED 1) NEDD8 ACTIVATING ENZYME/ PROTEIN HETERODIMERIZATION/ SMALL PROTEIN ACTIVATING ENZYME |
AT5G64630 | PredictedPhenotypic Enhancement | FSW = 0.0113
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G03870 | PredictedPhenotypic Enhancement | FSW = 0.0111
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G03190 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0266
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT4G02930 | Predictedpull down | FSW = 0.0042
| Unknown | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT1G59900 | PredictedPhenotypic Enhancement | FSW = 0.0204
| Unknown | AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT5G26780 | PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING |
AT5G65750 | Predictedpull down | FSW = 0.0115
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT3G02530 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | CHAPERONIN PUTATIVE |
AT1G79750 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1508
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT4G16420 | Predictedtwo hybrid | FSW = 0.0050
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G21710 | PredictedAffinity Capture-MS | FSW = 0.0318
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G38470 | PredictedPhenotypic Enhancement | FSW = 0.0133
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G20850 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0345
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT2G16950 | Predictedtwo hybridtwo hybrid | FSW = 0.0077
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT5G14530 | Predictedtwo hybridtwo hybrid | FSW = 0.0150
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G49540 | PredictedPhenotypic Enhancement | FSW = 0.0251
| Unknown | NUCLEOTIDE BINDING |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.1392
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT3G59410 | PredictedReconstituted Complexinterologs mappingAffinity Capture-Western | FSW = 0.0052
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G60860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0342
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G31985 | Predictedco-fractionationCo-fractionation | FSW = 0.0210
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT4G38630 | PredictedPhenotypic Enhancement | FSW = 0.0462
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G48640 | PredictedPhenotypic Enhancement | FSW = 0.0120
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G50320 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0168
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT3G24090 | PredictedAffinity Capture-MS | FSW = 0.2563
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT1G01960 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0374
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT2G25210 | Predictedco-fractionationCo-fractionationCo-expression | FSW = 0.0668
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39A) |
AT3G07740 | Predictedtwo hybrid | FSW = 0.0083
| Unknown | ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G15930 | Predictedinteraction prediction | FSW = 0.0168
| Unknown | MICROTUBULE MOTOR |
AT3G54540 | PredictedPhylogenetic profile method | FSW = 0.1050
| Unknown | ATGCN4 TRANSPORTER |
AT3G07960 | PredictedGene fusion method | FSW = 0.1050
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT2G17210 | PredictedGene fusion method | FSW = 0.0668
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454