Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G64600 - ( copper ion binding / methyltransferase )
23 Proteins interacs with AT1G64600Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G65540 | PredictedAffinity Capture-MS | FSW = 0.1455
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT5G56940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3810
| Unknown | RIBOSOMAL PROTEIN S16 FAMILY PROTEIN |
AT4G34620 | PredictedAffinity Capture-MS | FSW = 0.1739
| Unknown | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G74970 | PredictedAffinity Capture-Western | FSW = 0.4196
| Unknown | RPS9 (RIBOSOMAL PROTEIN S9) STRUCTURAL CONSTITUENT OF RIBOSOME |
ATCG00160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1133
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
ATCG01240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1212
| Unknown | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
ATCG00820 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1724
| Unknown | ENCODES A 68-KDA PROTEIN OF THE SMALL RIBOSOMAL SUBUNIT |
AT3G58510 | PredictedAffinity Capture-MS | FSW = 0.0649
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.0106
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT2G34520 | PredictedAffinity Capture-Western | FSW = 0.1683
| Unknown | RPS14 (MITOCHONDRIAL RIBOSOMAL PROTEIN S14) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G15870 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1455
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT5G02050 | PredictedAffinity Capture-MS | FSW = 0.1505
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT4G13850 | PredictedAffinity Capture-MSAffinity Capture-WesternCo-expression | FSW = 0.1667
| Unknown | GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) ATP BINDING / RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING |
AT3G03600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.2558
| Unknown | RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G30660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4202
| Unknown | 3-HYDROXYISOBUTYRYL-COENZYME A HYDROLASE PUTATIVE / COA-THIOESTER HYDROLASE PUTATIVE |
AT2G32600 | Predictedtwo hybridinteraction predictionCo-expression | FSW = 0.0369
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT3G49080 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.2034
| Unknown | RIBOSOMAL PROTEIN S9 FAMILY PROTEIN |
AT5G02530 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0197
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G15810 | PredictedAffinity Capture-MSAffinity Capture-WesternCo-expression | FSW = 0.3636
| Unknown | RIBOSOMAL PROTEIN S15 FAMILY PROTEIN |
AT2G30650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1621
| Unknown | CATALYTIC |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.0129
| Unknown | CATALYTIC |
AT2G23420 | PredictedSynthetic Lethality | FSW = 0.0104
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454