Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G64600 - ( copper ion binding / methyltransferase )

23 Proteins interacs with AT1G64600
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G65540

Predicted

Affinity Capture-MS

FSW = 0.1455

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT5G56940

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3810

Unknown

RIBOSOMAL PROTEIN S16 FAMILY PROTEIN
AT4G34620

Predicted

Affinity Capture-MS

FSW = 0.1739

Unknown

SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G74970

Predicted

Affinity Capture-Western

FSW = 0.4196

Unknown

RPS9 (RIBOSOMAL PROTEIN S9) STRUCTURAL CONSTITUENT OF RIBOSOME
ATCG00160Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1133

Unknown

CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG01240Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1212

Unknown

30S CHLOROPLAST RIBOSOMAL PROTEIN S7
ATCG00820Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1724

Unknown

ENCODES A 68-KDA PROTEIN OF THE SMALL RIBOSOMAL SUBUNIT
AT3G58510

Predicted

Affinity Capture-MS

FSW = 0.0649

Unknown

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0245

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT2G44950

Predicted

synthetic growth defect

FSW = 0.0106

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT2G34520

Predicted

Affinity Capture-Western

FSW = 0.1683

Unknown

RPS14 (MITOCHONDRIAL RIBOSOMAL PROTEIN S14) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G15870

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1455

Unknown

MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT5G02050

Predicted

Affinity Capture-MS

FSW = 0.1505

Unknown

MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT4G13850

Predicted

Affinity Capture-MS

Affinity Capture-Western

Co-expression

FSW = 0.1667

Unknown

GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) ATP BINDING / RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING
AT3G03600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

FSW = 0.2558

Unknown

RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G30660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4202

Unknown

3-HYDROXYISOBUTYRYL-COENZYME A HYDROLASE PUTATIVE / COA-THIOESTER HYDROLASE PUTATIVE
AT2G32600

Predicted

two hybrid

interaction prediction

Co-expression

FSW = 0.0369

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT3G49080

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2034

Unknown

RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT5G02530

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0197

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G15810

Predicted

Affinity Capture-MS

Affinity Capture-Western

Co-expression

FSW = 0.3636

Unknown

RIBOSOMAL PROTEIN S15 FAMILY PROTEIN
AT2G30650

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1621

Unknown

CATALYTIC
AT1G55255Predicted

synthetic growth defect

FSW = 0.0129

Unknown

CATALYTIC
AT2G23420

Predicted

Synthetic Lethality

FSW = 0.0104

Unknown

NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454