Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G64740 - ( TUA1 (ALPHA-1 TUBULIN) structural constituent of cytoskeleton )

16 Proteins interacs with AT1G64740
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14960

Predicted

Enriched domain pair

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.2557

Class C:

plasma membrane

cytoskeleton

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G04820Predicted

Enriched domain pair

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2651

Class C:

plasma membrane

TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G62690

Predicted

Enriched domain pair

Gene fusion method

FSW = 0.4357

Class C:

plasma membrane

TUB2 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT1G79920

Predicted

Affinity Capture-MS

two hybrid

FSW = 0.0529

Class C:

plasma membrane

ATP BINDING
AT5G59840

Predicted

in vivo

FSW = 0.0409

Class C:

plasma membrane

RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT5G19770

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.6923

Class C:

plasma membrane

TUA3 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G10220

Predicted

Affinity Capture-MS

in vitro

FSW = 0.1693

Class C:

cytoskeleton

TUBULIN FOLDING COFACTOR B
AT1G50010

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.5192

Class C:

cytoskeleton

TUA2 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G19780Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.6559

Class C:

cytoskeleton

TUA5 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G07140

Predicted

in vivo

FSW = 0.0381

Unknown

GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN
AT2G17800

Predicted

Affinity Capture-MS

in vivo

Co-expression

FSW = 0.0273

Unknown

ARAC1 GTP BINDING
AT4G28560

Predicted

Gene fusion method

FSW = 0.4297

Unknown

RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7) PROTEIN BINDING
AT3G20050

Predicted

in vivo

FSW = 0.0517

Unknown

ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT3G58040

Predicted

Affinity Capture-MS

two hybrid

Co-expression

FSW = 0.0301

Unknown

SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G08780

Predicted

in vitro

FSW = 0.0222

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT5G62700Predicted

Enriched domain pair

Gene fusion method

FSW = 0.3039

Unknown

TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454