Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G64750 - ( ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) )

52 Proteins interacs with AT1G64750
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G20200

Experimental

two hybrid

protein complementation assay

FSW = 0.3741

Unknown

EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT1G75990

Experimental

two hybrid

protein complementation assay

FSW = 0.2359

Unknown

26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3)
AT5G49450

Experimental

FSW = 0.0145

Unknown

ATBZIP1 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT5G01630

Experimental

two hybrid

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.0613

Unknown

BRCA2B (BRCA2-LIKE B) PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT4G02570

Experimental

FSW = 0.0031

Unknown

ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT5G20850

Experimental

FSW = 0.0364

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT3G22880

Experimental

FSW = 0.0224

Unknown

DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G00020

Experimental

two hybrid

Affinity Capture-Western

FSW = 0.0604

Unknown

PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT3G22630

Predicted

Affinity Capture-Western

Co-expression

FSW = 0.3140

Unknown

PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G04910

Predicted

Affinity Capture-MS

FSW = 0.0146

Unknown

NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G45000

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3845

Unknown

26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT1G04810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.4640

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G20580

Predicted

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

FSW = 0.2535

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT3G50360

Predicted

Affinity Capture-MS

FSW = 0.0109

Unknown

ATCEN2 (CENTRIN2) CALCIUM ION BINDING
AT1G53750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3089

Unknown

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G19990

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2357

Unknown

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT2G20140

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3784

Unknown

26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT1G09100

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.4302

Unknown

RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT4G24820

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-expression

FSW = 0.3536

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT4G05190

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0605

Unknown

ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR
AT5G39840

Predicted

interologs mapping

FSW = 0.0361

Unknown

ATP-DEPENDENT RNA HELICASE MITOCHONDRIAL PUTATIVE
AT1G13060

Predicted

Synthetic Lethality

FSW = 0.0736

Unknown

PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G16190

Predicted

Affinity Capture-MS

FSW = 0.2591

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G58290

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3423

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT1G29150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2514

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT5G09900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3919

Unknown

EMB2107 (EMBRYO DEFECTIVE 2107)
AT4G19006

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.4500

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT3G11270

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3605

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT4G38630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

Synthetic Lethality

Co-expression

FSW = 0.2243

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G23540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-expression

FSW = 0.3771

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT1G64520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3684

Unknown

RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT4G30890

Predicted

Affinity Capture-MS

FSW = 0.0468

Unknown

UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT2G39340

Predicted

Affinity Capture-MS

FSW = 0.0862

Unknown

SAC3/GANP FAMILY PROTEIN
AT2G23420

Predicted

Affinity Capture-MS

FSW = 0.0646

Unknown

NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT2G19560

Predicted

Affinity Capture-MS

FSW = 0.0280

Unknown

EER5 (ENHANCED ETHYLENE RESPONSE 5)
AT1G10520

Predicted

Affinity Capture-MS

FSW = 0.2352

Unknown

DNA POLYMERASE LAMBDA (POLL)
AT5G06160

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0088

Unknown

ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT1G51710

Predicted

Affinity Capture-MS

FSW = 0.3113

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT2G03430

Predicted

Affinity Capture-MS

FSW = 0.3653

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT3G56640

Predicted

interologs mapping

Synthetic Rescue

FSW = 0.0037

Unknown

EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT2G17190

Predicted

Phenotypic Suppression

FSW = 0.1609

Unknown

UBIQUITIN FAMILY PROTEIN
AT1G55255Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0305

Unknown

UBIQUITIN FAMILY PROTEIN
AT1G14400

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0674

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT3G22590

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0266

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT2G43790

Predicted

Synthetic Lethality

FSW = 0.0210

Unknown

ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT1G34150

Predicted

Synthetic Lethality

FSW = 0.0212

Unknown

TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT3G49660

Predicted

Synthetic Lethality

FSW = 0.0794

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G21060

Predicted

Synthetic Lethality

FSW = 0.0494

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G79730

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0890

Unknown

ELF7 (EARLY FLOWERING 7)
AT1G61040

Predicted

Synthetic Lethality

FSW = 0.0675

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT5G10790

Predicted

Synthetic Lethality

FSW = 0.0302

Unknown

UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT1G07270

Predicted

Synthetic Lethality

FSW = 0.0173

Unknown

CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454