Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G64750 - ( ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) )
52 Proteins interacs with AT1G64750Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20200 | Experimentaltwo hybridprotein complementation assay | FSW = 0.3741
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT1G75990 | Experimentaltwo hybridprotein complementation assay | FSW = 0.2359
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT5G49450 | Experimental | FSW = 0.0145
| Unknown | ATBZIP1 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR |
AT5G01630 | Experimentaltwo hybridAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0613
| Unknown | BRCA2B (BRCA2-LIKE B) PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT4G02570 | Experimental | FSW = 0.0031
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT5G20850 | Experimental | FSW = 0.0364
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT3G22880 | Experimental | FSW = 0.0224
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G00020 | Experimentaltwo hybridAffinity Capture-Western | FSW = 0.0604
| Unknown | PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT3G22630 | PredictedAffinity Capture-WesternCo-expression | FSW = 0.3140
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G04910 | PredictedAffinity Capture-MS | FSW = 0.0146
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G45000 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3845
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT1G04810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4640
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G20580 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.2535
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT3G50360 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | ATCEN2 (CENTRIN2) CALCIUM ION BINDING |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3089
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2357
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT2G20140 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3784
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT1G09100 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4302
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT4G24820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-expression | FSW = 0.3536
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT4G05190 | PredictedSynthetic LethalityCo-expression | FSW = 0.0605
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G39840 | Predictedinterologs mapping | FSW = 0.0361
| Unknown | ATP-DEPENDENT RNA HELICASE MITOCHONDRIAL PUTATIVE |
AT1G13060 | PredictedSynthetic Lethality | FSW = 0.0736
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G16190 | PredictedAffinity Capture-MS | FSW = 0.2591
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G58290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3423
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT1G29150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2514
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3919
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT4G19006 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4500
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT3G11270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3605
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic EnhancementSynthetic LethalityCo-expression | FSW = 0.2243
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G23540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-expression | FSW = 0.3771
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT1G64520 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3684
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT4G30890 | PredictedAffinity Capture-MS | FSW = 0.0468
| Unknown | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT2G39340 | PredictedAffinity Capture-MS | FSW = 0.0862
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT2G23420 | PredictedAffinity Capture-MS | FSW = 0.0646
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT2G19560 | PredictedAffinity Capture-MS | FSW = 0.0280
| Unknown | EER5 (ENHANCED ETHYLENE RESPONSE 5) |
AT1G10520 | PredictedAffinity Capture-MS | FSW = 0.2352
| Unknown | DNA POLYMERASE LAMBDA (POLL) |
AT5G06160 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0088
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT1G51710 | PredictedAffinity Capture-MS | FSW = 0.3113
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT2G03430 | PredictedAffinity Capture-MS | FSW = 0.3653
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G56640 | Predictedinterologs mappingSynthetic Rescue | FSW = 0.0037
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT2G17190 | PredictedPhenotypic Suppression | FSW = 0.1609
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT1G55255 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0305
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT1G14400 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0674
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT3G22590 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0266
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT2G43790 | PredictedSynthetic Lethality | FSW = 0.0210
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT1G34150 | PredictedSynthetic Lethality | FSW = 0.0212
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT3G49660 | PredictedSynthetic Lethality | FSW = 0.0794
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G21060 | PredictedSynthetic Lethality | FSW = 0.0494
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G79730 | PredictedSynthetic LethalityCo-expression | FSW = 0.0890
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT1G61040 | PredictedSynthetic Lethality | FSW = 0.0675
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT5G10790 | PredictedSynthetic Lethality | FSW = 0.0302
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT1G07270 | PredictedSynthetic Lethality | FSW = 0.0173
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454