Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G65040 - ( protein binding / zinc ion binding )

51 Proteins interacs with AT1G65040
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G77510

Predicted

Phenotypic Enhancement

FSW = 0.0381

Class C:

plasma membrane

ATPDIL1-2 (PDI-LIKE 1-2) PROTEIN DISULFIDE ISOMERASE
AT5G17920

Predicted

Affinity Capture-MS

FSW = 0.0644

Class C:

plasma membrane

ATMS1 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ COPPER ION BINDING / METHIONINE SYNTHASE
AT3G04120

Predicted

Affinity Capture-MS

FSW = 0.0248

Class C:

plasma membrane

GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G56070

Predicted

Affinity Capture-MS

FSW = 0.0161

Class C:

plasma membrane

LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT2G01470

Predicted

Phenotypic Enhancement

FSW = 0.0678

Class C:

plasma membrane

STL2P (SEC12P-LIKE 2 PROTEIN) NUCLEOTIDE BINDING
AT1G54270

Predicted

Affinity Capture-MS

FSW = 0.0070

Class C:

plasma membrane

EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT3G03780

Predicted

Affinity Capture-MS

FSW = 0.0385

Class C:

plasma membrane

ATMS2 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ METHIONINE SYNTHASE
AT3G02520

Predicted

Affinity Capture-MS

FSW = 0.0128

Class C:

plasma membrane

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G56030

Predicted

Affinity Capture-MS

FSW = 0.0382

Class C:

plasma membrane

HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT3G09840

Predicted

Affinity Capture-MS

FSW = 0.0139

Class C:

plasma membrane

CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING
AT1G35160

Predicted

Affinity Capture-MS

FSW = 0.0131

Class C:

plasma membrane

GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G29310

Predicted

Synthetic Rescue

interologs mapping

Synthetic Rescue

FSW = 0.0476

Class C:

plasma membrane

P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0277

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G09620

Predicted

Affinity Capture-MS

FSW = 0.0198

Class C:

plasma membrane

ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT1G62740

Predicted

Affinity Capture-MS

FSW = 0.0831

Class C:

plasma membrane

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT1G53750

Predicted

Affinity Capture-Western

FSW = 0.0339

Class C:

plasma membrane

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G60640

Predicted

interologs mapping

FSW = 0.0428

Unknown

ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE
AT5G55400

Predicted

Affinity Capture-MS

FSW = 0.0193

Unknown

FIMBRIN-LIKE PROTEIN PUTATIVE
AT1G76490

Predicted

Reconstituted Complex

FSW = 0.1146

Unknown

HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE
AT5G36880

Predicted

Affinity Capture-MS

FSW = 0.0439

Unknown

ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE
AT1G50200

Predicted

Affinity Capture-MS

FSW = 0.0296

Unknown

ALATS (ALANYL-TRNA SYNTHETASE) ATP BINDING / ALANINE-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G45300

Predicted

Affinity Capture-MS

FSW = 0.0454

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT5G63890

Predicted

Affinity Capture-MS

FSW = 0.0196

Unknown

ATHDH (HISTIDINOL DEHYDROGENASE) HISTIDINOL DEHYDROGENASE
AT3G57050

Predicted

Affinity Capture-MS

FSW = 0.0078

Unknown

CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE
AT1G48860

Predicted

Affinity Capture-MS

FSW = 0.0234

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT2G17520

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0891

Unknown

IRE1A ENDORIBONUCLEASE/ KINASE
AT3G60180

Predicted

Affinity Capture-MS

FSW = 0.0248

Unknown

URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE
AT4G10710

Predicted

Affinity Capture-MS

FSW = 0.0087

Unknown

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670

Predicted

Affinity Capture-MS

FSW = 0.0113

Unknown

GTC2
AT3G13920

Predicted

Affinity Capture-MS

FSW = 0.0378

Unknown

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT2G04750

Predicted

Affinity Capture-MS

FSW = 0.0090

Unknown

FIMBRIN-LIKE PROTEIN PUTATIVE
AT1G18260

Predicted

Affinity Capture-Western

interologs mapping

FSW = 0.1146

Unknown

SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED
AT3G28730

Predicted

Affinity Capture-MS

FSW = 0.0127

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT1G72550

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

TRNA SYNTHETASE BETA SUBUNIT FAMILY PROTEIN
AT5G03340

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0487

Unknown

CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE
AT1G23820

Predicted

Affinity Capture-MS

FSW = 0.0409

Unknown

SPDS1 (SPERMIDINE SYNTHASE 1) SPERMIDINE SYNTHASE
AT1G78720

Predicted

Synthetic Rescue

interologs mapping

Synthetic Rescue

FSW = 0.0394

Unknown

PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE
AT3G55380

Predicted

Affinity Capture-Western

FSW = 0.0563

Unknown

UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT4G34100

Predicted

Phenotypic Enhancement

FSW = 0.2125

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT1G74310

Predicted

Affinity Capture-MS

FSW = 0.0428

Unknown

ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G79990

Predicted

Phenotypic Enhancement

FSW = 0.0464

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT2G22480

Predicted

Affinity Capture-MS

FSW = 0.0266

Unknown

PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE
AT2G34770

Predicted

interologs mapping

Phenotypic Suppression

FSW = 0.0454

Unknown

FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT3G45010

Predicted

Affinity Capture-Western

FSW = 0.0379

Unknown

SCPL48 (SERINE CARBOXYPEPTIDASE-LIKE 48) SERINE-TYPE CARBOXYPEPTIDASE
AT4G38930

Predicted

Affinity Capture-Western

FSW = 0.0519

Unknown

UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN
AT5G26667

Predicted

Affinity Capture-MS

FSW = 0.0399

Unknown

PYR6 CYTIDYLATE KINASE/ URIDYLATE KINASE
AT5G50550

Predicted

Phenotypic Enhancement

FSW = 0.0667

Unknown

WD-40 REPEAT FAMILY PROTEIN / ST12P PROTEIN PUTATIVE
AT5G59980

Predicted

Affinity Capture-MS

FSW = 0.0189

Unknown

RNASE P SUBUNIT P30 FAMILY PROTEIN
AT1G12270

Predicted

Affinity Capture-MS

FSW = 0.0671

Unknown

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT3G46460

Predicted

Affinity Capture-Western

Enriched domain pair

FSW = 0.0439

Unknown

UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE
AT1G52360

Predicted

interologs mapping

FSW = 0.0310

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454