Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G65040 - ( protein binding / zinc ion binding )
51 Proteins interacs with AT1G65040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G77510 | PredictedPhenotypic Enhancement | FSW = 0.0381
| Class C:plasma membrane | ATPDIL1-2 (PDI-LIKE 1-2) PROTEIN DISULFIDE ISOMERASE |
AT5G17920 | PredictedAffinity Capture-MS | FSW = 0.0644
| Class C:plasma membrane | ATMS1 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ COPPER ION BINDING / METHIONINE SYNTHASE |
AT3G04120 | PredictedAffinity Capture-MS | FSW = 0.0248
| Class C:plasma membrane | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G56070 | PredictedAffinity Capture-MS | FSW = 0.0161
| Class C:plasma membrane | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT2G01470 | PredictedPhenotypic Enhancement | FSW = 0.0678
| Class C:plasma membrane | STL2P (SEC12P-LIKE 2 PROTEIN) NUCLEOTIDE BINDING |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0070
| Class C:plasma membrane | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G03780 | PredictedAffinity Capture-MS | FSW = 0.0385
| Class C:plasma membrane | ATMS2 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ METHIONINE SYNTHASE |
AT3G02520 | PredictedAffinity Capture-MS | FSW = 0.0128
| Class C:plasma membrane | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0382
| Class C:plasma membrane | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT3G09840 | PredictedAffinity Capture-MS | FSW = 0.0139
| Class C:plasma membrane | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT1G35160 | PredictedAffinity Capture-MS | FSW = 0.0131
| Class C:plasma membrane | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G29310 | PredictedSynthetic Rescueinterologs mappingSynthetic Rescue | FSW = 0.0476
| Class C:plasma membrane | P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0277
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G09620 | PredictedAffinity Capture-MS | FSW = 0.0198
| Class C:plasma membrane | ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G62740 | PredictedAffinity Capture-MS | FSW = 0.0831
| Class C:plasma membrane | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT1G53750 | PredictedAffinity Capture-Western | FSW = 0.0339
| Class C:plasma membrane | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G60640 | Predictedinterologs mapping | FSW = 0.0428
| Unknown | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
AT5G55400 | PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT1G76490 | PredictedReconstituted Complex | FSW = 0.1146
| Unknown | HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE |
AT5G36880 | PredictedAffinity Capture-MS | FSW = 0.0439
| Unknown | ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE |
AT1G50200 | PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | ALATS (ALANYL-TRNA SYNTHETASE) ATP BINDING / ALANINE-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G45300 | PredictedAffinity Capture-MS | FSW = 0.0454
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G63890 | PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | ATHDH (HISTIDINOL DEHYDROGENASE) HISTIDINOL DEHYDROGENASE |
AT3G57050 | PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE |
AT1G48860 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT2G17520 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0891
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT3G60180 | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE |
AT4G10710 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT4G10670 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | GTC2 |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0378
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT2G04750 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT1G18260 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.1146
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT3G28730 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT1G72550 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | TRNA SYNTHETASE BETA SUBUNIT FAMILY PROTEIN |
AT5G03340 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0487
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT1G23820 | PredictedAffinity Capture-MS | FSW = 0.0409
| Unknown | SPDS1 (SPERMIDINE SYNTHASE 1) SPERMIDINE SYNTHASE |
AT1G78720 | PredictedSynthetic Rescueinterologs mappingSynthetic Rescue | FSW = 0.0394
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT3G55380 | PredictedAffinity Capture-Western | FSW = 0.0563
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT4G34100 | PredictedPhenotypic Enhancement | FSW = 0.2125
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G74310 | PredictedAffinity Capture-MS | FSW = 0.0428
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G79990 | PredictedPhenotypic Enhancement | FSW = 0.0464
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G22480 | PredictedAffinity Capture-MS | FSW = 0.0266
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT2G34770 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0454
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT3G45010 | PredictedAffinity Capture-Western | FSW = 0.0379
| Unknown | SCPL48 (SERINE CARBOXYPEPTIDASE-LIKE 48) SERINE-TYPE CARBOXYPEPTIDASE |
AT4G38930 | PredictedAffinity Capture-Western | FSW = 0.0519
| Unknown | UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN |
AT5G26667 | PredictedAffinity Capture-MS | FSW = 0.0399
| Unknown | PYR6 CYTIDYLATE KINASE/ URIDYLATE KINASE |
AT5G50550 | PredictedPhenotypic Enhancement | FSW = 0.0667
| Unknown | WD-40 REPEAT FAMILY PROTEIN / ST12P PROTEIN PUTATIVE |
AT5G59980 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | RNASE P SUBUNIT P30 FAMILY PROTEIN |
AT1G12270 | PredictedAffinity Capture-MS | FSW = 0.0671
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT3G46460 | PredictedAffinity Capture-WesternEnriched domain pair | FSW = 0.0439
| Unknown | UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE |
AT1G52360 | Predictedinterologs mapping | FSW = 0.0310
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454