Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G65290 - ( mtACP2 (mitochondrial acyl carrier protein 2) acyl carrier/ metal ion binding )
27 Proteins interacs with AT1G65290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G35670 | Experimentaltwo hybrid | FSW = 0.0116
| Class B:plasma membranenucleusmitochondrioncytosolClass D:plastid (p = 0.78) | ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE |
AT2G04540 | Predictedpull down | FSW = 0.0298
| Class C:mitochondrion | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) SYNTHASE II PUTATIVE |
AT5G47630 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0286
| Class C:mitochondrion | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT5G65720 | Predictedtandem affinity purification | FSW = 0.0242
| Class C:mitochondrion | NFS1 ATP BINDING / CYSTEINE DESULFURASE/ TRANSAMINASE |
AT5G41790 | Predictedpull down | FSW = 0.0743
| Unknown | CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0041
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G22230 | Predictedpull down | FSW = 0.0667
| Unknown | BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE |
AT3G17170 | Predictedpull down | FSW = 0.0690
| Unknown | RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G14320 | Predictedpull down | FSW = 0.0605
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT1G62640 | Predictedpull down | FSW = 0.1333
| Unknown | KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III) 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE/ CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT2G38040 | Predictedpull down | FSW = 0.0870
| Unknown | CAC3 ACETYL-COA CARBOXYLASE |
AT4G18440 | Predictedblue native page | FSW = 0.0726
| Unknown | ADENYLOSUCCINATE LYASE PUTATIVE / ADENYLOSUCCINASE PUTATIVE |
AT1G24360 | Predictedpull down | FSW = 0.0444
| Unknown | 3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE CHLOROPLAST / 3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE |
AT2G33450 | Predictedpull down | FSW = 0.0842
| Unknown | 50S RIBOSOMAL PROTEIN L28 CHLOROPLAST (CL28) |
AT4G02260 | Predictedpull down | FSW = 0.2148
| Unknown | RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC |
AT4G01800 | Predictedpull down | FSW = 0.0430
| Unknown | PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE |
ATCG00770 | Predictedpull down | FSW = 0.1684
| Unknown | CHLOROPLAST 30S RIBOSOMAL PROTEIN S8 |
ATCG00810 | Predictedpull down | FSW = 0.2068
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG01240 | Predictedpull down | FSW = 0.0889
| Unknown | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
AT4G02050 | PredictedAffinity Capture-MS | FSW = 0.0541
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT1G09330 | Predictedtwo hybrid | FSW = 0.0444
| Unknown | UNKNOWN PROTEIN |
AT5G11900 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN |
AT5G37055 | Predictedtwo hybrid | FSW = 0.0611
| Unknown | SEF (SERRATED LEAVES AND EARLY FLOWERING) |
AT3G22310 | Predictedpull down | FSW = 0.1726
| Unknown | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING |
AT4G21220 | Predictedpull down | FSW = 0.1302
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
AT5G64670 | Predictedpull down | FSW = 0.0505
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454