Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G65440 - ( GTB1 RNA binding / hydrolase acting on ester bonds / transcription elongation regulator )
44 Proteins interacs with AT1G65440Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G32130 | Experimentaltwo hybrid | FSW = 0.1657
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT5G19320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1879
| Class C:nucleus | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT3G49010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0565
| Class C:nucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G59690 | Predictedinterologs mappinginteraction prediction | FSW = 0.0743
| Class C:nucleus | HISTONE H4 |
AT1G29960 | PredictedAffinity Capture-MS | FSW = 0.0300
| Class C:nucleus | PEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT5G19310 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0377
| Class C:nucleus | HOMEOTIC GENE REGULATOR PUTATIVE |
AT4G10710 | PredictedAffinity Capture-MS | FSW = 0.1371
| Class C:nucleus | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT2G38560 | Predictedsynthetic growth defect | FSW = 0.0979
| Class C:nucleus | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT4G08350 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethality | FSW = 0.1711
| Class C:nucleus | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT3G17590 | PredictedSynthetic Rescue | FSW = 0.0314
| Class C:nucleus | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT4G38510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2139
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0668
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G64050 | Predictedpull down | FSW = 0.0227
| Unknown | ERS (GLUTAMATE TRNA SYNTHETASE) GLUTAMATE-TRNA LIGASE |
AT4G35800 | PredictedAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.0738
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G14610 | Predictedpull down | FSW = 0.0262
| Unknown | TWN2 (TWIN 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / VALINE-TRNA LIGASE |
AT3G28730 | Predictedco-fractionationCo-fractionationsynthetic growth defectAffinity Capture-MS | FSW = 0.0891
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT4G21710 | Predictedsynthetic growth defect | FSW = 0.0667
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G03360 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.2336
| Unknown | ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) RNA BINDING / EXONUCLEASE |
AT1G54440 | PredictedCo-purificationAffinity Capture-Western | FSW = 0.1429
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT4G27490 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.1412
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT2G17510 | PredictedCo-purification | FSW = 0.0434
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
AT2G32415 | PredictedCo-purificationAffinity Capture-Western | FSW = 0.0203
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT3G07750 | PredictedCo-purification | FSW = 0.1412
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT3G46210 | PredictedCo-purification | FSW = 0.1118
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT3G61620 | PredictedCo-purification | FSW = 0.1429
| Unknown | RRP41 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT5G38890 | PredictedCo-purification | FSW = 0.0842
| Unknown | EXORIBONUCLEASE-RELATED |
AT1G61040 | Predictedsynthetic growth defect | FSW = 0.1515
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT3G08650 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2508
| Unknown | METAL TRANSPORTER FAMILY PROTEIN |
AT4G23920 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0341
| Unknown | UGE2 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 2) UDP-GLUCOSE 4-EPIMERASE/ PROTEIN DIMERIZATION |
AT4G32850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1399
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT5G13570 | Predictedtwo hybridinteraction prediction | FSW = 0.0192
| Unknown | DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0726
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G40530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2659
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
AT5G58410 | PredictedPhenotypic Enhancement | FSW = 0.1795
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G60870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1372
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G63670 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.2220
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT2G23070 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0513
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G28720 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | HISTONE H2B PUTATIVE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.0366
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G58560 | PredictedSynthetic RescueSynthetic RescueSynthetic Rescueinteraction prediction | FSW = 0.0333
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G10400 | Predictedinterologs mappinginteraction prediction | FSW = 0.0791
| Unknown | HISTONE H3 |
AT5G10960 | PredictedSynthetic Rescue | FSW = 0.0126
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G46030 | PredictedSynthetic Lethality | FSW = 0.1426
| Unknown | UNKNOWN PROTEIN |
AT5G67380 | Predictedinteraction prediction | FSW = 0.0237
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454