Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G65540 - ( calcium-binding EF hand family protein )
26 Proteins interacs with AT1G65540Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G59820 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1379
| Class C:unclear | CALCIUM-BINDING MITOCHONDRIAL PROTEIN-RELATED |
AT5G45130 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0464
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT3G63490 | PredictedAffinity Capture-MS | FSW = 0.1169
| Unknown | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0092
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G56940 | PredictedAffinity Capture-MS | FSW = 0.1736
| Unknown | RIBOSOMAL PROTEIN S16 FAMILY PROTEIN |
ATCG00160 | PredictedAffinity Capture-MS | FSW = 0.0893
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT3G13445 | PredictedAffinity Capture-Western | FSW = 0.0258
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0044
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT3G17465 | PredictedAffinity Capture-MS | FSW = 0.2151
| Unknown | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G34520 | PredictedAffinity Capture-MS | FSW = 0.1078
| Unknown | RPS14 (MITOCHONDRIAL RIBOSOMAL PROTEIN S14) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G59650 | PredictedAffinity Capture-MS | FSW = 0.0645
| Unknown | MITOCHONDRIAL RIBOSOMAL PROTEIN L51/S25/CI-B8 FAMILY PROTEIN |
AT4G31460 | PredictedAffinity Capture-MS | FSW = 0.3180
| Unknown | RIBOSOMAL PROTEIN L28 FAMILY PROTEIN |
AT4G02570 | PredictedPhenotypic Enhancement | FSW = 0.0059
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT1G07830 | PredictedAffinity Capture-MS | FSW = 0.2151
| Unknown | RIBOSOMAL PROTEIN L29 FAMILY PROTEIN |
AT1G14620 | PredictedAffinity Capture-MS | FSW = 0.3214
| Unknown | DECOY (DECOY) |
AT1G64600 | PredictedAffinity Capture-MS | FSW = 0.1455
| Unknown | COPPER ION BINDING / METHYLTRANSFERASE |
AT2G19160 | PredictedAffinity Capture-MS | FSW = 0.1818
| Unknown | UNKNOWN PROTEIN |
AT3G17630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSsynthetic growth defect | FSW = 0.2612
| Unknown | ATCHX19 (CATION/H+ EXCHANGER 19) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT3G47120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1452
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G44635 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0362
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.0237
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT3G12490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1341
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT3G49080 | PredictedAffinity Capture-MS | FSW = 0.0693
| Unknown | RIBOSOMAL PROTEIN S9 FAMILY PROTEIN |
AT5G64650 | PredictedAffinity Capture-MS | FSW = 0.1108
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
AT5G64670 | PredictedAffinity Capture-MS | FSW = 0.1161
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
AT3G22590 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0202
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454