Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G65660 - ( SMP1 (SWELLMAP 1) nucleic acid binding / single-stranded RNA binding )
29 Proteins interacs with AT1G65660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedAffinity Capture-Westernbiochemical | FSW = 0.0048
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G07590 | Predictedtwo hybrid | FSW = 0.1111
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT4G02840 | Predictedtwo hybridinteraction prediction | FSW = 0.1104
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT3G26590 | Predictedbiochemical | FSW = 0.0117
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G20390 | PredictedAffinity Capture-MS | FSW = 0.0371
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT1G20960 | Predictedtwo hybridinteraction prediction | FSW = 0.1524
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G09770 | PredictedAffinity Capture-MS | FSW = 0.1405
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.0513
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT1G80070 | PredictedSynthetic Lethalityco-fractionationCo-fractionationSynthetic Lethalityco-fractionationCo-fractionation | FSW = 0.1526
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT5G06290 | Predictedbiochemical | FSW = 0.0053
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT2G33340 | PredictedAffinity Capture-MS | FSW = 0.0894
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G20760 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G04510 | PredictedAffinity Capture-MS | FSW = 0.0799
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G10320 | Predictedtwo hybridCo-expression | FSW = 0.0436
| Unknown | U2 SNRNP AUXILIARY FACTOR-RELATED |
AT3G26560 | Predictedtwo hybridinteraction prediction | FSW = 0.3323
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT5G63960 | PredictedSynthetic Rescue | FSW = 0.0136
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G09880 | Predictedtwo hybrid | FSW = 0.0436
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G01940 | Predictedtwo hybrid | FSW = 0.0642
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT1G03140 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridSynthetic LethalitySynthetic LethalityReconstituted Complexinterologs mappingco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MStwo hybridSynthetic LethalityAffinity Capture-MStwo hybridco-fractionationCo-fractionationSynthetic LethalitySynthetic RescueAffinity Capture-WesternReconstituted Complexinterologs mappinginteraction prediction | FSW = 0.1905
| Unknown | SPLICING FACTOR PRP18 FAMILY PROTEIN |
AT1G10580 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityco-fractionationCo-fractionationSynthetic Lethalityco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.2071
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G16800 | Predictedtwo hybrid | FSW = 0.0227
| Unknown | TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED |
AT2G30650 | PredictedSynthetic Rescue | FSW = 0.0312
| Unknown | CATALYTIC |
AT2G44150 | PredictedSynthetic Lethality | FSW = 0.0044
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT5G13010 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityinterologs mappingco-fractionationCo-fractionationSynthetic Lethalityco-fractionationCo-fractionationinterologs mapping | FSW = 0.0962
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G41770 | PredictedAffinity Capture-MS | FSW = 0.1124
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT2G16940 | Predictedtwo hybrid | FSW = 0.0333
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G03430 | Predictedinteraction predictiontwo hybrid | FSW = 0.0119
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT4G37120 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2597
| Unknown | SMP2 SINGLE-STRANDED RNA BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454