Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G65700 - ( small nuclear ribonucleoprotein putative / snRNP putative / Sm protein putative )
33 Proteins interacs with AT1G65700Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G07590 | Predictedtwo hybridCo-expression | FSW = 0.1000
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT4G02840 | Predictedtwo hybrid | FSW = 0.0766
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT1G09770 | PredictedAffinity Capture-Western | FSW = 0.0329
| Class C:nucleus | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G08370 | Predictedtwo hybrid | FSW = 0.0296
| Class C:nucleus | DCP1 (DECAPPING 1) M7G(5)PPPN DIPHOSPHATASE/ PROTEIN HOMODIMERIZATION |
AT4G30220 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.1337
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT3G59810 | Predictedin vitro | FSW = 0.2540
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT2G03870 | Predictedin vitroCo-expression | FSW = 0.0628
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G27720 | Predictedin vitroCo-expression | FSW = 0.0684
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G03330 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.1142
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
AT1G21190 | Predictedin vitro | FSW = 0.1256
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G76860 | Predictedin vitroGene neighbors methodCo-expression | FSW = 0.1674
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G48870 | Predictedin vitroCo-expression | FSW = 0.1277
| Class C:nucleus | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
AT4G24880 | Predictedtwo hybrid | FSW = 0.0269
| Class C:nucleus | UNKNOWN PROTEIN |
AT4G11860 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOSOL NUCLEUS PLASMA MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF544 (INTERPROIPR007518) UBIQUITIN INTERACTING MOTIF (INTERPROIPR003903) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G229601) HAS 761 BLAST HITS TO 466 PROTEINS IN 133 SPECIES ARCHAE - 0 BACTERIA - 44 METAZOA - 311 FUNGI - 246 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 103 (SOURCE NCBI BLINK) |
AT5G51100 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | FSD2 (FE SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT1G12230 | Predictedtwo hybrid | FSW = 0.0296
| Unknown | TRANSALDOLASE PUTATIVE |
AT5G47010 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT1G21630 | Predictedtwo hybrid | FSW = 0.0202
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G02360 | Predictedtwo hybrid | FSW = 0.0504
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT5G41670 | Predictedtwo hybrid | FSW = 0.0541
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT3G10920 | Predictedtwo hybridtwo hybrid | FSW = 0.0043
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G64520 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0069
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT3G55170 | Predictedtwo hybridtwo hybrid | FSW = 0.0222
| Unknown | 60S RIBOSOMAL PROTEIN L35 (RPL35C) |
AT4G32910 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0317
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN NUP85-LIKE (INTERPROIPR011502) HAS 161 BLAST HITS TO 158 PROTEINS IN 60 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 128 FUNGI - 10 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT5G42040 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | RPN12B (REGULATORY PARTICLE NON-ATPASE 12B) PEPTIDASE |
AT1G30540 | Predictedtwo hybrid | FSW = 0.0741
| Unknown | ATPASE BADF/BADG/BCRA/BCRD-TYPE FAMILY |
AT2G44160 | Predictedtwo hybrid | FSW = 0.0493
| Unknown | MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2) METHYLENETETRAHYDROFOLATE REDUCTASE (NADPH) |
AT3G59970 | Predictedtwo hybrid | FSW = 0.0552
| Unknown | MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1) METHYLENETETRAHYDROFOLATE REDUCTASE (NADPH) |
AT4G02220 | Predictedtwo hybrid | FSW = 0.0275
| Unknown | ZINC FINGER (MYND TYPE) FAMILY PROTEIN / PROGRAMMED CELL DEATH 2 C-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT4G22960 | Predictedtwo hybrid | FSW = 0.0239
| Unknown | UNKNOWN PROTEIN |
AT2G03270 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | DNA-BINDING PROTEIN PUTATIVE |
AT4G27490 | Predictedtwo hybrid | FSW = 0.0278
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT5G27060 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | ATRLP53 (RECEPTOR LIKE PROTEIN 53) KINASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454