Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G65700 - ( small nuclear ribonucleoprotein putative / snRNP putative / Sm protein putative )

33 Proteins interacs with AT1G65700
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G07590

Predicted

two hybrid

Co-expression

FSW = 0.1000

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT4G02840

Predicted

two hybrid

FSW = 0.0766

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT1G09770

Predicted

Affinity Capture-Western

FSW = 0.0329

Class C:

nucleus

ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT1G08370

Predicted

two hybrid

FSW = 0.0296

Class C:

nucleus

DCP1 (DECAPPING 1) M7G(5)PPPN DIPHOSPHATASE/ PROTEIN HOMODIMERIZATION
AT4G30220

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.1337

Class C:

nucleus

RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT3G59810

Predicted

in vitro

FSW = 0.2540

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT2G03870

Predicted

in vitro

Co-expression

FSW = 0.0628

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G27720

Predicted

in vitro

Co-expression

FSW = 0.0684

Class C:

nucleus

EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G03330

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.1142

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT1G21190

Predicted

in vitro

FSW = 0.1256

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G76860

Predicted

in vitro

Gene neighbors method

Co-expression

FSW = 0.1674

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G48870

Predicted

in vitro

Co-expression

FSW = 0.1277

Class C:

nucleus

SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT4G24880

Predicted

two hybrid

FSW = 0.0269

Class C:

nucleus

UNKNOWN PROTEIN
AT4G11860

Predicted

two hybrid

FSW = 0.0250

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOSOL NUCLEUS PLASMA MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF544 (INTERPROIPR007518) UBIQUITIN INTERACTING MOTIF (INTERPROIPR003903) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G229601) HAS 761 BLAST HITS TO 466 PROTEINS IN 133 SPECIES ARCHAE - 0 BACTERIA - 44 METAZOA - 311 FUNGI - 246 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 103 (SOURCE NCBI BLINK)
AT5G51100

Predicted

two hybrid

FSW = 0.0250

Unknown

FSD2 (FE SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT1G12230

Predicted

two hybrid

FSW = 0.0296

Unknown

TRANSALDOLASE PUTATIVE
AT5G47010

Predicted

two hybrid

FSW = 0.0097

Unknown

LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE
AT1G21630

Predicted

two hybrid

FSW = 0.0202

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT3G02360

Predicted

two hybrid

FSW = 0.0504

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT5G41670

Predicted

two hybrid

FSW = 0.0541

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT3G10920

Predicted

two hybrid

two hybrid

FSW = 0.0043

Unknown

MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT1G64520

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0069

Unknown

RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT3G55170

Predicted

two hybrid

two hybrid

FSW = 0.0222

Unknown

60S RIBOSOMAL PROTEIN L35 (RPL35C)
AT4G32910

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0317

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN NUP85-LIKE (INTERPROIPR011502) HAS 161 BLAST HITS TO 158 PROTEINS IN 60 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 128 FUNGI - 10 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK)
AT5G42040

Predicted

two hybrid

FSW = 0.0256

Unknown

RPN12B (REGULATORY PARTICLE NON-ATPASE 12B) PEPTIDASE
AT1G30540

Predicted

two hybrid

FSW = 0.0741

Unknown

ATPASE BADF/BADG/BCRA/BCRD-TYPE FAMILY
AT2G44160

Predicted

two hybrid

FSW = 0.0493

Unknown

MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2) METHYLENETETRAHYDROFOLATE REDUCTASE (NADPH)
AT3G59970

Predicted

two hybrid

FSW = 0.0552

Unknown

MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1) METHYLENETETRAHYDROFOLATE REDUCTASE (NADPH)
AT4G02220

Predicted

two hybrid

FSW = 0.0275

Unknown

ZINC FINGER (MYND TYPE) FAMILY PROTEIN / PROGRAMMED CELL DEATH 2 C-TERMINAL DOMAIN-CONTAINING PROTEIN
AT4G22960

Predicted

two hybrid

FSW = 0.0239

Unknown

UNKNOWN PROTEIN
AT2G03270

Predicted

two hybrid

FSW = 0.0250

Unknown

DNA-BINDING PROTEIN PUTATIVE
AT4G27490

Predicted

two hybrid

FSW = 0.0278

Unknown

3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN
AT5G27060

Predicted

two hybrid

FSW = 0.0250

Unknown

ATRLP53 (RECEPTOR LIKE PROTEIN 53) KINASE/ PROTEIN BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454