Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G66530 - ( arginyl-tRNA synthetase putative / arginine--tRNA ligase putative )

5 Proteins interacs with AT1G66530
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G26300

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0482

Unknown

EMB1027 (EMBRYO DEFECTIVE 1027) ATP BINDING / AMINOACYL-TRNA LIGASE/ ARGININE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT3G12360

Predicted

Gene fusion method

FSW = 0.0381

Unknown

ITN1 (INCREASED TOLERANCE TO NACL) PROTEIN BINDING
AT3G25230

Predicted

Affinity Capture-MS

FSW = 0.0400

Unknown

ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G47120

Predicted

Affinity Capture-MS

FSW = 0.0364

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G09900

Predicted

two hybrid

Co-expression

FSW = 0.0146

Unknown

EMB2107 (EMBRYO DEFECTIVE 2107)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454