Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G66810 - ( zinc finger (CCCH-type) family protein )
15 Proteins interacs with AT1G66810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.1832
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT5G25400 | PredictedAffinity Capture-MS | FSW = 0.0671
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0688
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0982
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT5G47630 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT5G02730 | PredictedAffinity Capture-MS | FSW = 0.0704
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G18100 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT2G06040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1143
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK) |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G47120 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G60340 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT3G27580 | PredictedAffinity Capture-MS | FSW = 0.1678
| Unknown | ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G20560 | PredictedAffinity Capture-MS | FSW = 0.0972
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT1G48175 | Predictedinteraction prediction | FSW = 0.1270
| Unknown | EMB2191 (EMBRYO DEFECTIVE 2191) CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454