Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G67490 - ( GCS1 (GLUCOSIDASE 1) alpha-glucosidase )
30 Proteins interacs with AT1G67490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G61790 | PredictedPhenotypic Enhancement | FSW = 0.2505
| Class C:endoplasmic reticulum | CALNEXIN 1 (CNX1) |
AT1G77510 | PredictedPhenotypic Enhancement | FSW = 0.0896
| Class C:endoplasmic reticulum | ATPDIL1-2 (PDI-LIKE 1-2) PROTEIN DISULFIDE ISOMERASE |
AT5G66680 | PredictedPhenotypic Enhancement | FSW = 0.1229
| Class C:endoplasmic reticulum | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.1716
| Class C:endoplasmic reticulum | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT4G21180 | PredictedPhenotypic Enhancement | FSW = 0.0794
| Class C:endoplasmic reticulum | ATERDJ2B HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.1410
| Class C:endoplasmic reticulum | CALCIUM-TRANSPORTING ATPASE |
AT2G17520 | Predictedsynthetic growth defect | FSW = 0.1691
| Class C:endoplasmic reticulum | IRE1A ENDORIBONUCLEASE/ KINASE |
AT2G39630 | PredictedSynthetic Rescue | FSW = 0.3012
| Class C:endoplasmic reticulum | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT3G62290 | PredictedPhenotypic Suppression | FSW = 0.0241
| Unknown | ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT1G30450 | PredictedSynthetic Lethality | FSW = 0.0963
| Unknown | CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1) CATIONCHLORIDE SYMPORTER/ SODIUMPOTASSIUMCHLORIDE SYMPORTER |
AT3G18140 | PredictedSynthetic Rescue | FSW = 0.0425
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G09760 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0273
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0159
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G75990 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT2G20510 | Predictedinteraction prediction | FSW = 0.0212
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT2G44660 | PredictedPhenotypic Suppression | FSW = 0.3115
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT1G01230 | PredictedPhenotypic Enhancement | FSW = 0.1407
| Unknown | ORMDL FAMILY PROTEIN |
AT1G07430 | PredictedSynthetic Lethality | FSW = 0.0538
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G08750 | PredictedPhenotypic Enhancement | FSW = 0.0995
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G09020 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0408
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G16560 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.3004
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G26450 | Predictedinteraction predictionPhenotypic EnhancementSynthetic LethalitySynthetic Lethality | FSW = 0.3075
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G57600 | PredictedPhenotypic EnhancementSynthetic Lethalityinteraction prediction | FSW = 0.2048
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G50030 | PredictedSynthetic Rescue | FSW = 0.0514
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.3057
| Unknown | CATALYTIC/ TRANSFERASE |
AT4G08500 | PredictedSynthetic Lethality | FSW = 0.0716
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT5G42000 | PredictedPhenotypic Suppression | FSW = 0.0679
| Unknown | ORMDL FAMILY PROTEIN |
AT5G24940 | Predictedinteraction prediction | FSW = 0.0662
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G54960 | Predictedinteraction prediction | FSW = 0.1076
| Unknown | ANP2 MAP KINASE KINASE KINASE/ KINASE |
AT1G24320 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4585
| Unknown | ALPHA-GLUCOSIDASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454