Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G67630 - ( POLA2 (DNA POLYMERASE ALPHA 2) DNA binding / DNA-directed DNA polymerase )

22 Proteins interacs with AT1G67630
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G41790

Predicted

interaction prediction

FSW = 0.0121

Unknown

CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT1G64330

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0291

Unknown

MYOSIN HEAVY CHAIN-RELATED
AT2G06510

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0216

Unknown

RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT2G30110

Predicted

Affinity Capture-MS

FSW = 0.0346

Unknown

ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE
AT3G58680

Predicted

two hybrid

two hybrid

FSW = 0.0400

Unknown

MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT3G47690

Predicted

Synthetic Lethality

FSW = 0.0269

Unknown

ATEB1A MICROTUBULE BINDING
AT2G37560

Predicted

Affinity Capture-Western

FSW = 0.0334

Unknown

ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0123

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT2G39740

Predicted

two hybrid

FSW = 0.0814

Unknown

UNKNOWN PROTEIN
AT5G65740

Predicted

two hybrid

two hybrid

FSW = 0.0345

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT5G67100

Predicted

two hybrid

in vivo

in vivo

in vitro

in vitro

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1467

Unknown

ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE
AT5G41880

Predicted

in vitro

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

Co-expression

FSW = 0.0787

Unknown

POLA3 DNA PRIMASE
AT1G67320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

synthetic growth defect

in vitro

interaction prediction

Co-expression

FSW = 0.1839

Unknown

DNA PRIMASE LARGE SUBUNIT FAMILY
AT5G22010

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0850

Unknown

ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G77470

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1020

Unknown

REPLICATION FACTOR C 36 KDA PUTATIVE
AT5G27740

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0752

Unknown

EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G63160

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0828

Unknown

REPLICATION FACTOR C 40 KDA PUTATIVE
AT1G15920

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0674

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT2G31320

Predicted

in vitro

in vivo

Co-expression

FSW = 0.1065

Unknown

PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2) DNA BINDING / NAD OR NADH BINDING / NAD+ ADP-RIBOSYLTRANSFERASE/ ZINC ION BINDING
AT4G15770

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0080

Unknown

RNA BINDING / PROTEIN BINDING
AT5G64550

Predicted

two hybrid

FSW = 0.0229

Unknown

LORICRIN-RELATED
AT2G32070

Predicted

interaction prediction

FSW = 0.1839

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454