Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G68050 - ( FKF1 (FLAVIN-BINDING KELCH REPEAT F BOX 1) signal transducer/ two-component sensor/ ubiquitin-protein ligase )

18 Proteins interacs with AT1G68050
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G75950

Experimental

two hybrid

FSW = 0.0918

Unknown

SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G56280

Experimental

two hybrid

FSW = 0.1488

Unknown

ATDI19
AT2G18915

Experimental

two hybrid

FSW = 0.6095

Unknown

LKP2 (LOV KELCH PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G22770

Experimental

in vitro

coimmunoprecipitation

two hybrid

Reconstituted Complex

pull down

two hybrid

Affinity Capture-Western

in vitro

affinity technology

FSW = 0.1894

Unknown

GI (GIGANTEA)
AT5G61380

Experimental

two hybrid

two hybrid

Reconstituted Complex

Affinity Capture-Western

two hybrid

FSW = 0.1344

Unknown

TOC1 (TIMING OF CAB EXPRESSION 1) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT5G24470

Experimental

two hybrid

two hybrid

Reconstituted Complex

Affinity Capture-Western

FSW = 0.1559

Unknown

APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT5G62430

Experimental

pull down

two hybrid

Reconstituted Complex

FSW = 0.1214

Unknown

CDF1 (CYCLING DOF FACTOR 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G39660

Experimental

pull down

two hybrid

Reconstituted Complex

FSW = 0.0726

Unknown

CDF2 (CYCLING DOF FACTOR 2) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT3G47500

Experimental

pull down

two hybrid

Reconstituted Complex

FSW = 0.0726

Unknown

CDF3 (CYCLING DOF FACTOR 3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G42190

Experimental

two hybrid

two hybrid

FSW = 0.0609

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G25700

Experimental

two hybrid

FSW = 0.2755

Unknown

ASK3 (ARABIDOPSIS SKP1-LIKE 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G34210

Experimental

two hybrid

two hybrid

FSW = 0.1897

Unknown

ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G34470

Experimental

two hybrid

FSW = 0.2634

Unknown

ASK12 (ARABIDOPSIS SKP1-LIKE 12) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G60010

Experimental

two hybrid

FSW = 0.2314

Unknown

ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G10940

Experimental

FSW = 0.0431

Unknown

SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE
AT5G08590

Experimental

FSW = 0.0462

Unknown

SNRK21 (SNF1-RELATED PROTEIN KINASE 21) KINASE/ PROTEIN KINASE
AT3G05840

Experimental

FSW = 0.0305

Unknown

ATSK12 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G03170

Experimental

FSW = 0.2630

Unknown

ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454