Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G68200 - ( zinc finger (CCCH-type) family protein )
24 Proteins interacs with AT1G68200Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16480 | PredictedAffinity Capture-Western | FSW = 0.0100
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.0151
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G26590 | PredictedAffinity Capture-MS | FSW = 0.0206
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G10350 | Predictedbiochemical | FSW = 0.0282
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G10450 | Predictedin vitroin vivotwo hybridAffinity Capture-MS | FSW = 0.0195
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G60820 | PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G64270 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G02780 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G56350 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G26340 | PredictedSynthetic Rescue | FSW = 0.0103
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G24380 | PredictedAffinity Capture-MS | FSW = 0.0645
| Unknown | YSL2 (YELLOW STRIPE LIKE 2) OLIGOPEPTIDE TRANSPORTER |
AT3G53870 | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.0287
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT1G63780 | Predictedbiochemical | FSW = 0.0165
| Unknown | IMP4 |
AT2G36010 | Predictedtwo hybrid | FSW = 0.0169
| Unknown | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G22220 | Predictedtwo hybrid | FSW = 0.0108
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT1G74810 | PredictedSynthetic Rescue | FSW = 0.0126
| Unknown | BOR5 ANION EXCHANGER |
AT1G78770 | PredictedAffinity Capture-MS | FSW = 0.0121
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT5G19360 | PredictedAffinity Capture-MS | FSW = 0.0280
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
ATCG00905 | PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
AT3G18520 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0110
| Unknown | HDA15 HISTONE DEACETYLASE |
AT4G36050 | Predictedbiochemicalbiochemical | FSW = 0.0159
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G04510 | PredictedAffinity Capture-MS | FSW = 0.0470
| Unknown | PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454