Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G68310 - ( vacuolar sorting signal binding )
28 Proteins interacs with AT1G68310Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedSynthetic Lethality | FSW = 0.0144
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G23740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3902
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT3G12110 | PredictedSynthetic Lethality | FSW = 0.0085
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G22180 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0938
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G23700 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5030
| Unknown | ATCHX17 (CATION/H+ EXCHANGER 17) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT2G29140 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4321
| Unknown | APUM3 (ARABIDOPSIS PUMILIO 3) RNA BINDING / BINDING |
AT1G07180 | PredictedAffinity Capture-MS | FSW = 0.1658
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT4G28220 | PredictedAffinity Capture-MS | FSW = 0.4257
| Unknown | NDB1 (NAD(P)H DEHYDROGENASE B1) NADH DEHYDROGENASE/ DISULFIDE OXIDOREDUCTASE |
AT4G09800 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G50060 | PredictedAffinity Capture-MS | FSW = 0.4132
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G26060 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-MStwo hybridtwo hybrid | FSW = 0.0510
| Unknown | EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING |
AT1G08840 | PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.0107
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G60860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2049
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G22756 | PredictedAffinity Capture-MS | FSW = 0.3122
| Unknown | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC |
AT5G27740 | PredictedSynthetic Lethality | FSW = 0.0179
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G44635 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2161
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0202
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G31260 | PredictedAffinity Capture-MS | FSW = 0.0058
| Unknown | APG9 (AUTOPHAGY 9) |
AT3G08910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3559
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT4G02900 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G16440 | PredictedAffinity Capture-MS | FSW = 0.0536
| Unknown | FERREDOXIN HYDROGENASE |
AT4G30820 | PredictedAffinity Capture-MS | FSW = 0.0388
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
AT5G48120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0277
| Unknown | BINDING |
AT5G56510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4532
| Unknown | APUM12 (ARABIDOPSIS PUMILIO 12) RNA BINDING / BINDING |
AT2G01170 | Predictedtwo hybrid | FSW = 0.0282
| Unknown | BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G09380 | PredictedPhylogenetic profile method | FSW = 0.1032
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN SPERM CELL FLOWER EXPRESSED DURING PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF59 (INTERPROIPR002744) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS VACUOLAR SORTING SIGNAL BINDING (TAIRAT1G683102) HAS 408 BLAST HITS TO 408 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 214 FUNGI - 85 PLANTS - 40 VIRUSES - 0 OTHER EUKARYOTES - 69 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454