Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G68390 - ( unknown protein )
18 Proteins interacs with AT1G68390Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G30390 | PredictedReconstituted Complex | FSW = 0.2513
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT1G07890 | Predictedinterologs mapping | FSW = 0.0672
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT2G45130 | PredictedPhenotypic Enhancement | FSW = 0.1159
| Unknown | SPX3 (SPX DOMAIN GENE 3) |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.0559
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT2G42590 | Predictedtwo hybrid | FSW = 0.0897
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G26340 | Predictedtwo hybrid | FSW = 0.0450
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G68100 | Predictedtwo hybrid | FSW = 0.0952
| Unknown | IAR1 (IAA-ALANINE RESISTANT 1) METAL ION TRANSMEMBRANE TRANSPORTER |
AT1G10060 | Predictedtwo hybrid | FSW = 0.0800
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT4G33730 | Predictedtwo hybrid | FSW = 0.0802
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G07880 | Predictedtwo hybrid | FSW = 0.0672
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G47830 | PredictedAffinity Capture-MS | FSW = 0.0066
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G66950 | Predictedtwo hybrid | FSW = 0.1546
| Unknown | PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G71530 | Predictedtwo hybrid | FSW = 0.1450
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G19090 | Predictedtwo hybrid | FSW = 0.1371
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.0647
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G14880 | PredictedReconstituted Complex | FSW = 0.1508
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT5G57480 | PredictedPhenotypic Enhancement | FSW = 0.0818
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454