Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G69120 - ( AP1 (APETALA1) DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factor )
43 Proteins interacs with AT1G69120| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G24540
   | Experimentaltwo hybridtwo hybridtwo hybrid | FSW = 0.4237
| Class A:nucleuscytosolClass D:nucleus (p = 0.78) | AGL24 (AGAMOUS-LIKE 24) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G31640
| Experimentaltwo hybrid | FSW = 0.1118
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | AGL92 (AGAMOUS-LIKE 92) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G57230
| Experimentaltwo hybrid | FSW = 0.5098
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | AGL16 (AGAMOUS-LIKE 16) TRANSCRIPTION FACTOR |
| AT1G31140
| Experimental | FSW = 0.0678
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | AGL63 (AGAMOUS-LIKE 63) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G38620
| Experimental | FSW = 0.2236
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | MADS-BOX PROTEIN (AGL73) |
| AT4G09960
| Experimental | FSW = 0.4661
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | STK (SEEDSTICK) PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT5G23260
| Experimentaltwo hybrid | FSW = 0.4407
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | TT16 (TRANSPARENT TESTA16) TRANSCRIPTION FACTOR |
| AT1G24260
| Experimentaltwo hybridtwo hybridtwo hybridAffinity Capture-Westerninferred by author | FSW = 0.4859
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | SEP3 (SEPALLATA3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT1G26310
| Experimental | FSW = 0.3086
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | CAL (CAULIFLOWER) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G02310
| Experimental | FSW = 0.3117
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | SEP2 (SEPALLATA 2) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT5G15800
| Experimentaltwo hybrid | FSW = 0.4487
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | SEP1 (SEPALLATA1) DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G03710
| Experimentaltwo hybrid | FSW = 0.2315
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | SEP4 (SEPALLATA 4) DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G43700
| Experimental | FSW = 0.0174
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT4G32551
| Experimentalpull down | FSW = 0.0703
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | LUG (LEUNIG) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION REPRESSOR |
| AT5G20240
| ExperimentalReconstituted Complex | FSW = 0.2591
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | PI (PISTILLATA) DNA BINDING / TRANSCRIPTION FACTOR |
| AT4G18960
| ExperimentalReconstituted Complex | FSW = 0.5219
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G48150
| Experimentaltwo hybrid | FSW = 0.2523
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | MADS-BOX PROTEIN (AGL74 ) |
| AT1G77080
| Experimentaltwo hybrid | FSW = 0.2591
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82) | MAF1 (MADS AFFECTING FLOWERING 1) TRANSCRIPTION FACTOR |
| AT4G37940
| Experimentaltwo hybrid | FSW = 0.4020
| Class A:nucleusClass B:cytosol | AGL21 TRANSCRIPTION FACTOR |
| AT5G61210
| Experimental | FSW = 0.0145
| Class A:cytosolClass B:plastidplasma membranenucleusClass D:nucleus (p = 0.78) | SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP RECEPTOR/ PROTEIN BINDING |
| AT3G06380
| Experimental | FSW = 0.0497
| Class A:cytosolClass B:nucleusClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | ATTLP9 (TUBBY-LIKE PROTEIN 9) PHOSPHORIC DIESTER HYDROLASE/ PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT1G31630
| Experimentaltwo hybrid | FSW = 0.0790
| Class A:cytosolClass B:nucleusClass D:mitochondrion (p = 0.82) | AGL86 (AGAMOUS-LIKE 86) DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G71692
| Experimental | FSW = 0.3676
| Class B:unclearnucleuscytosolClass D:mitochondrion (p = 0.82) | AGL12 (AGAMOUS-LIKE 12) TRANSCRIPTION FACTOR |
| AT3G22942
| Experimental | FSW = 0.0203
| Class B:plasma membranenucleusgolgicytosolClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | AGG2 (G-PROTEIN GAMMA SUBUNIT 2) |
| AT5G13300
| Experimentalfar western blotting | FSW = 0.0102
| Class B:plasma membranenucleusgolgicytosolClass D:nucleus (p = 0.78) | SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING |
| AT5G13790
| Experimentaltwo hybrid | FSW = 0.3318
| Class B:plasma membranenucleuscytosolClass D:nucleus (p = 0.78) | AGL15 (AGAMOUS-LIKE 15) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G54340
| ExperimentalReconstituted Complex | FSW = 0.2188
| Class D:nucleus (p = 0.78)mitochondrion (p = 0.82) | AP3 (APETALA 3) DNA BINDING / TRANSCRIPTION FACTOR |
| AT4G11880
| Experimental | FSW = 0.4622
| Class D:nucleus (p = 0.78)mitochondrion (p = 0.82) | AGL14 (AGAMOUS-LIKE 14) DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G45660
| Experimentaltwo hybridtwo hybrid | FSW = 0.4120
| Class D:nucleus (p = 0.78)mitochondrion (p = 0.82) | AGL20 (AGAMOUS-LIKE 20) TRANSCRIPTION FACTOR |
| AT2G22540
| Experimentaltwo hybridtwo hybridtwo hybrid | FSW = 0.3072
| Class D:nucleus (p = 0.78) | SVP (SHORT VEGETATIVE PHASE) TRANSCRIPTION FACTOR/ TRANSLATION REPRESSOR NUCLEIC ACID BINDING |
| AT2G22630
| Experimental | FSW = 0.2641
| Class D:nucleus (p = 0.78) | AGL17 (AGAMOUS-LIKE 17) TRANSCRIPTION FACTOR |
| AT1G43850
| Experimentaltwo hybridpull downReconstituted Complextwo hybrid | FSW = 0.2041
| Class D:nucleus (p = 0.78) | SEU (SEUSS) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION COFACTOR |
| AT2G45650
| Experimentaltwo hybrid | FSW = 0.6132
| Class D:nucleus (p = 0.78) | AGL6 (AGAMOUS-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G58780
| Experimental | FSW = 0.4877
| Class D:nucleus (p = 0.78) | SHP1 (SHATTERPROOF 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT5G27130
| Experimentaltwo hybrid | FSW = 0.1516
| Unknown | AGL39 (AGAMOUS LIKE 39) DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G46408
| Experimentaltwo hybrid | FSW = 0.1240
| Unknown | AGL97 (AGAMOUS-LIKE 97) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G65260
| Experimental | FSW = 0.0248
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
| AT1G77950
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1029
| Class C:nucleus | AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR |
| AT3G30260
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0696
| Class C:nucleus | AGL79 (AGAMOUS-LIKE 79) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G13570
| PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION |
| AT3G18430
| Predictedinterologs mapping | FSW = 0.0261
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT1G09460
| PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0219
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
| AT3G57390
| PredictedGene fusion methodCo-expression | FSW = 0.0870
| Unknown | AGL18 TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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