Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G69640 - ( SBH1 (SPHINGOID BASE HYDROXYLASE 1) catalytic/ sphingosine hydroxylase )

30 Proteins interacs with AT1G69640
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G66680

Predicted

two hybrid

interaction prediction

FSW = 0.1570

Unknown

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT1G31780

Predicted

Phenotypic Enhancement

FSW = 0.1416

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT5G45130

Predicted

Phenotypic Enhancement

FSW = 0.0543

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT5G13710

Predicted

Phenotypic Enhancement

FSW = 0.0791

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT3G12110

Predicted

Synthetic Rescue

FSW = 0.0206

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G23630

Predicted

Phenotypic Enhancement

FSW = 0.1372

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G07670

Predicted

Phenotypic Enhancement

FSW = 0.0920

Unknown

CALCIUM-TRANSPORTING ATPASE
AT5G05670

Predicted

two hybrid

FSW = 0.1441

Unknown

SIGNAL RECOGNITION PARTICLE BINDING
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0211

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G03800

Predicted

Phenotypic Enhancement

FSW = 0.2188

Unknown

SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR
AT2G17520

Predicted

Phenotypic Suppression

FSW = 0.0827

Unknown

IRE1A ENDORIBONUCLEASE/ KINASE
AT1G27980

Predicted

interologs mapping

FSW = 0.2626

Unknown

DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING
AT1G67730

Predicted

two hybrid

FSW = 0.1306

Unknown

YBR159 KETOREDUCTASE/ OXIDOREDUCTASE
AT5G66020

Predicted

Phenotypic Enhancement

FSW = 0.1372

Unknown

ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT2G44660

Predicted

Phenotypic Enhancement

FSW = 0.1052

Unknown

TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS
AT1G13580

Predicted

Phenotypic Enhancement

FSW = 0.0430

Unknown

LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G08750

Predicted

two hybrid

interaction prediction

FSW = 0.2420

Unknown

GPI-ANCHOR TRANSAMIDASE PUTATIVE
AT1G47290

Predicted

interologs mapping

FSW = 0.0588

Unknown

AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) 3-BETA-HYDROXY-DELTA5-STEROID DEHYDROGENASE/ STEROL-4-ALPHA-CARBOXYLATE 3-DEHYDROGENASE (DECARBOXYLATING)
AT1G80500

Predicted

Phenotypic Suppression

FSW = 0.0599

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK)
AT2G34770

Predicted

Phenotypic Suppression

FSW = 0.1188

Unknown

FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT2G34980

Predicted

two hybrid

interaction prediction

FSW = 0.1746

Unknown

SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT3G58490

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

synthetic growth defect

FSW = 0.2531

Unknown

PHOSPHATIDIC ACID PHOSPHATASE FAMILY PROTEIN / PAP2 FAMILY PROTEIN
AT4G21540

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1984

Unknown

SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE
AT5G42000

Predicted

Phenotypic Suppression

FSW = 0.1038

Unknown

ORMDL FAMILY PROTEIN
AT3G06460

Predicted

two hybrid

interaction prediction

FSW = 0.1688

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT4G22750

Predicted

two hybrid

FSW = 0.2050

Unknown

ZINC FINGER (DHHC TYPE) FAMILY PROTEIN
AT4G40042

Predicted

interaction prediction

FSW = 0.1692

Unknown

PEPTIDASE
AT2G18770

Predicted

interaction prediction

FSW = 0.2243

Unknown

SIGNAL RECOGNITION PARTICLE BINDING
AT1G14290

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6011

Unknown

SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE
AT2G29390

Predicted

Gene fusion method

Co-expression

FSW = 0.0078

Unknown

SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454