Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G69640 - ( SBH1 (SPHINGOID BASE HYDROXYLASE 1) catalytic/ sphingosine hydroxylase )
30 Proteins interacs with AT1G69640Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66680 | Predictedtwo hybridinteraction prediction | FSW = 0.1570
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT1G31780 | PredictedPhenotypic Enhancement | FSW = 0.1416
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.0543
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.0791
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT3G12110 | PredictedSynthetic Rescue | FSW = 0.0206
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.1372
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.0920
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT5G05670 | Predictedtwo hybrid | FSW = 0.1441
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0211
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G03800 | PredictedPhenotypic Enhancement | FSW = 0.2188
| Unknown | SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR |
AT2G17520 | PredictedPhenotypic Suppression | FSW = 0.0827
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT1G27980 | Predictedinterologs mapping | FSW = 0.2626
| Unknown | DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING |
AT1G67730 | Predictedtwo hybrid | FSW = 0.1306
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.1372
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT2G44660 | PredictedPhenotypic Enhancement | FSW = 0.1052
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT1G13580 | PredictedPhenotypic Enhancement | FSW = 0.0430
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G08750 | Predictedtwo hybridinteraction prediction | FSW = 0.2420
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G47290 | Predictedinterologs mapping | FSW = 0.0588
| Unknown | AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) 3-BETA-HYDROXY-DELTA5-STEROID DEHYDROGENASE/ STEROL-4-ALPHA-CARBOXYLATE 3-DEHYDROGENASE (DECARBOXYLATING) |
AT1G80500 | PredictedPhenotypic Suppression | FSW = 0.0599
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G34770 | PredictedPhenotypic Suppression | FSW = 0.1188
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G34980 | Predictedtwo hybridinteraction prediction | FSW = 0.1746
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT3G58490 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.2531
| Unknown | PHOSPHATIDIC ACID PHOSPHATASE FAMILY PROTEIN / PAP2 FAMILY PROTEIN |
AT4G21540 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1984
| Unknown | SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE |
AT5G42000 | PredictedPhenotypic Suppression | FSW = 0.1038
| Unknown | ORMDL FAMILY PROTEIN |
AT3G06460 | Predictedtwo hybridinteraction prediction | FSW = 0.1688
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT4G22750 | Predictedtwo hybrid | FSW = 0.2050
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT4G40042 | Predictedinteraction prediction | FSW = 0.1692
| Unknown | PEPTIDASE |
AT2G18770 | Predictedinteraction prediction | FSW = 0.2243
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT1G14290 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6011
| Unknown | SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT2G29390 | PredictedGene fusion methodCo-expression | FSW = 0.0078
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454