Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G69680 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s Mog1/PsbP/DUF1795 alpha/beta/alpha sandwich (InterProIPR016124) Ran-interacting Mog1 protein (InterProIPR007681) Mog1/PsbP alpha/beta/alpha sandwich (InterProIPR016123) Has 202 Blast hits to 202 proteins in 100 species Archae - 0 Bacteria - 0 Metazoa - 55 Fungi - 83 Plants - 25 Viruses - 0 Other Eukaryotes - 39 (source NCBI BLink) )

15 Proteins interacs with AT1G69680
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G20020

Predicted

in vitro

two hybrid

Affinity Capture-MS

FSW = 0.0922

Unknown

RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G20010

Predicted

two hybrid

FSW = 0.1546

Unknown

RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G52640

Predicted

two hybrid

FSW = 0.0026

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G27310

Predicted

interologs mapping

FSW = 0.1391

Unknown

NTF2A (NUCLEAR TRANSPORT FACTOR 2A) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT5G58590

Predicted

in vitro

FSW = 0.2268

Unknown

RANBP1 (RAN BINDING PROTEIN 1) PROTEIN BINDING
AT2G26150

Predicted

Reconstituted Complex

FSW = 0.1401

Unknown

ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR
AT5G63860

Predicted

Synthetic Lethality

FSW = 0.0916

Unknown

UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT1G07140

Predicted

in vitro

FSW = 0.2975

Unknown

SIRANBP RAN GTPASE BINDING
AT5G55190

Predicted

interaction prediction

Affinity Capture-MS

two hybrid

in vitro

two hybrid

Affinity Capture-MS

interologs mapping

FSW = 0.1693

Unknown

RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.0157

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT2G17820

Predicted

two hybrid

Reconstituted Complex

FSW = 0.0504

Unknown

ATHK1 (HISTIDINE KINASE 1) HISTIDINE PHOSPHOTRANSFER KINASE/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT5G10960

Predicted

Synthetic Lethality

FSW = 0.0308

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G26680

Predicted

synthetic growth defect

FSW = 0.0383

Unknown

ENDONUCLEASE PUTATIVE
AT1G27320

Predicted

Reconstituted Complex

two hybrid

FSW = 0.0202

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G15920

Predicted

Synthetic Lethality

FSW = 0.0340

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454