Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G69840 - ( band 7 family protein )

7 Proteins interacs with AT1G69840
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G26090

Experimental

pull down

Affinity Capture-MS

affinity technology

FSW = 0.2045

Class D:

cytosol (p = 0.67)

RPS2 (RESISTANT TO P SYRINGAE 2) PROTEIN BINDING
AT5G35750

Experimental

pull down

two hybrid

FSW = 0.0617

Unknown

AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G03860

Predicted

Gene fusion method

Co-expression

FSW = 0.1905

Class C:

vacuole

plastid

ATPHB2 (PROHIBITIN 2)
AT3G01290

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3865

Class C:

vacuole

plasma membrane

BAND 7 FAMILY PROTEIN
AT5G62740

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.5346

Class C:

vacuole

plasma membrane

BAND 7 FAMILY PROTEIN
AT5G51570

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3037

Class C:

vacuole

plasma membrane

BAND 7 FAMILY PROTEIN
AT2G20530

Predicted

Gene fusion method

FSW = 0.1955

Class C:

vacuole

ATPHB6 (PROHIBITIN 6)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454