Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G69850 - ( ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) calcium ion binding / transporter )
28 Proteins interacs with AT1G69850Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G08710 | PredictedPhenotypic Enhancement | FSW = 0.0765
| Class C:plasma membrane | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G01620 | PredictedPhenotypic Enhancement | FSW = 0.0281
| Class C:plasma membrane | PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL |
AT4G18760 | PredictedPhenotypic Enhancement | FSW = 0.1545
| Class C:plasma membrane | ATRLP51 (RECEPTOR LIKE PROTEIN 51) PROTEIN BINDING |
AT5G26340 | PredictedCo-purificationAffinity Capture-MStwo hybridAffinity Capture-Westerntwo hybridAffinity Capture-Westerntwo hybridAffinity Capture-MSCo-purification | FSW = 0.2636
| Class C:plasma membrane | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G20920 | PredictedPhenotypic Enhancement | FSW = 0.2269
| Class C:plasma membrane | TRANSLOCATION PROTEIN-RELATED |
AT2G39480 | PredictedPhenotypic Enhancement | FSW = 0.1003
| Class C:plasma membrane | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G02040 | PredictedGene fusion methodCo-expression | FSW = 0.0388
| Unknown | PTR2 (PEPTIDE TRANSPORTER 2) DIPEPTIDE TRANSPORTER/ HIGH AFFINITY OLIGOPEPTIDE TRANSPORTER/ NITRATE TRANSMEMBRANE TRANSPORTER/ PEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT3G07100 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT3G17430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0627
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT1G02680 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0090
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G15430 | PredictedPhenotypic Enhancement | FSW = 0.0514
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G21190 | Predictedtwo hybrid | FSW = 0.0939
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G33730 | PredictedPhenotypic Enhancement | FSW = 0.2005
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G43460 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT2G27170 | Predictedtwo hybrid | FSW = 0.0366
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT2G27340 | PredictedPhenotypic Enhancement | FSW = 0.1398
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT2G29190 | PredictedPhenotypic Enhancement | FSW = 0.2333
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT2G46650 | Predictedtwo hybrid | FSW = 0.0735
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
AT3G19450 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.2367
| Unknown | ATCAD4 CINNAMYL-ALCOHOL DEHYDROGENASE |
AT4G38330 | PredictedPhenotypic Enhancement | FSW = 0.0258
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S HLY-III RELATED (INTERPROIPR004254) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G382901) HAS 8 BLAST HITS TO 8 PROTEINS IN 1 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 8 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT5G19300 | PredictedPhenotypic Enhancement | FSW = 0.1821
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK) |
AT5G25520 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2471
| Unknown | TRANSCRIPTION ELONGATION FACTOR-RELATED |
AT5G52200 | PredictedPhenotypic Enhancement | FSW = 0.0988
| Unknown | UNKNOWN PROTEIN |
AT5G52210 | PredictedSynthetic Lethality | FSW = 0.0968
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G57190 | PredictedPhenotypic EnhancementCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-Westerntwo hybridCo-purification | FSW = 0.4259
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT5G66410 | PredictedPhenotypic Enhancement | FSW = 0.1634
| Unknown | PLP3B (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING |
AT3G29060 | PredictedPhenotypic Enhancement | FSW = 0.1870
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK) |
AT1G27040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0099
| Unknown | NITRATE TRANSPORTER PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454