Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G70190 - ( ribosomal protein L12 family protein )

24 Proteins interacs with AT1G70190
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G63400

Predicted

biochemical

FSW = 0.0105

Class C:

mitochondrion

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT3G45770

Predicted

two hybrid

FSW = 0.2005

Class C:

mitochondrion

OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT1G10060

Predicted

two hybrid

FSW = 0.1048

Class C:

mitochondrion

BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1)
AT1G45332Predicted

Affinity Capture-MS

FSW = 0.0593

Class C:

mitochondrion

MITOCHONDRIAL ELONGATION FACTOR PUTATIVE
AT1G27400

Predicted

two hybrid

FSW = 0.0459

Unknown

60S RIBOSOMAL PROTEIN L17 (RPL17A)
AT3G08710

Predicted

two hybrid

FSW = 0.0716

Unknown

ATH9 (THIOREDOXIN H-TYPE 9)
AT3G07100

Predicted

two hybrid

FSW = 0.1284

Unknown

PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE
AT2G42590

Predicted

two hybrid

FSW = 0.1108

Unknown

GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G60790

Predicted

Affinity Capture-MS

FSW = 0.0298

Unknown

ATGCN1 TRANSPORTER
AT4G15000

Predicted

two hybrid

FSW = 0.0451

Unknown

60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT4G13980

Predicted

biochemical

FSW = 0.0110

Unknown

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT2G20490

Predicted

two hybrid

FSW = 0.1226

Unknown

NOP10 RNA BINDING
AT4G39160

Predicted

two hybrid

FSW = 0.0725

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT5G10330Predicted

Affinity Capture-MS

FSW = 0.0102

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT1G07880

Predicted

two hybrid

FSW = 0.0957

Unknown

ATMPK13 MAP KINASE/ KINASE
AT1G71530

Predicted

two hybrid

FSW = 0.3067

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT2G46650

Predicted

two hybrid

FSW = 0.3312

Unknown

CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING
AT3G61210

Predicted

two hybrid

FSW = 0.3538

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT4G25960

Predicted

two hybrid

FSW = 0.0596

Unknown

PGP2 (P-GLYCOPROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G30820

Predicted

two hybrid

FSW = 0.3175

Unknown

CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED
AT5G13570

Predicted

Affinity Capture-MS

FSW = 0.0156

Unknown

DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION
AT3G10530

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0340

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G40010

Predicted

Affinity Capture-MS

FSW = 0.0214

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)
AT2G36930

Predicted

Affinity Capture-MS

FSW = 0.0074

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454