Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G70190 - ( ribosomal protein L12 family protein )
24 Proteins interacs with AT1G70190Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63400 | Predictedbiochemical | FSW = 0.0105
| Class C:mitochondrion | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G45770 | Predictedtwo hybrid | FSW = 0.2005
| Class C:mitochondrion | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT1G10060 | Predictedtwo hybrid | FSW = 0.1048
| Class C:mitochondrion | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G45332 | PredictedAffinity Capture-MS | FSW = 0.0593
| Class C:mitochondrion | MITOCHONDRIAL ELONGATION FACTOR PUTATIVE |
AT1G27400 | Predictedtwo hybrid | FSW = 0.0459
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17A) |
AT3G08710 | Predictedtwo hybrid | FSW = 0.0716
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT3G07100 | Predictedtwo hybrid | FSW = 0.1284
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT2G42590 | Predictedtwo hybrid | FSW = 0.1108
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G60790 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | ATGCN1 TRANSPORTER |
AT4G15000 | Predictedtwo hybrid | FSW = 0.0451
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT4G13980 | Predictedbiochemical | FSW = 0.0110
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G20490 | Predictedtwo hybrid | FSW = 0.1226
| Unknown | NOP10 RNA BINDING |
AT4G39160 | Predictedtwo hybrid | FSW = 0.0725
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT5G10330 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT1G07880 | Predictedtwo hybrid | FSW = 0.0957
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G71530 | Predictedtwo hybrid | FSW = 0.3067
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G46650 | Predictedtwo hybrid | FSW = 0.3312
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
AT3G61210 | Predictedtwo hybrid | FSW = 0.3538
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT4G25960 | Predictedtwo hybrid | FSW = 0.0596
| Unknown | PGP2 (P-GLYCOPROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G30820 | Predictedtwo hybrid | FSW = 0.3175
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
AT5G13570 | PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION |
AT3G10530 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0340
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G40010 | PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT2G36930 | PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454