Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G70320 - ( UPL2 (UBIQUITIN-PROTEIN LIGASE 2) ubiquitin-protein ligase )
18 Proteins interacs with AT1G70320Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G23990 | Predictedtwo hybrid | FSW = 0.0403
| Class C:mitochondrion | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0490
| Class C:mitochondrion | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT3G04770 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0817
| Unknown | RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G52640 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0160
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G18040 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G79930 | PredictedSynthetic Rescue | FSW = 0.0309
| Unknown | HSP91 ATP BINDING |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G54280 | PredictedSynthetic Rescue | FSW = 0.0159
| Unknown | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G36170 | PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT4G25340 | Predictedinterologs mappinginterologs mapping | FSW = 0.0180
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT1G04160 | PredictedAffinity Capture-MS | FSW = 0.0392
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT4G05320 | PredictedAffinity Capture-Western | FSW = 0.0090
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT2G33240 | PredictedAffinity Capture-MS | FSW = 0.1667
| Unknown | XID MOTOR/ PROTEIN BINDING |
AT3G11450 | PredictedSynthetic RescueAffinity Capture-MS | FSW = 0.0201
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
AT3G26500 | PredictedSynthetic Rescue | FSW = 0.0206
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT5G08420 | Predictedtwo hybrid | FSW = 0.0169
| Unknown | RNA BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454