Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G71230 - ( CSN5B (COP9-SIGNALOSOME 5B) protein binding )
30 Proteins interacs with AT1G71230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15850 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.1769
| Class D:nucleus (p = 0.78) | COL1 (CONSTANS-LIKE 1) TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G30950 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.1931
| Class D:nucleus (p = 0.78) | UFO (UNUSUAL FLORAL ORGANS) TRANSCRIPTION FACTOR BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G56280 | ExperimentalAffinity Capture-Western | FSW = 0.3522
| Class D:nucleus (p = 0.78) | CSN6A |
AT4G26430 | Experimental | FSW = 0.2525
| Class D:nucleus (p = 0.78) | CSN6B |
AT5G14250 | Experimentalaffinity technologyAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationco-fractionationCo-fractionation | FSW = 0.3721
| Class D:nucleus (p = 0.78) | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING |
AT3G61140 | ExperimentalAffinity Capture-WesternAffinity Capture-Westernmolecular sievingAffinity Capture-Westernaffinity technology | FSW = 0.3827
| Class D:nucleus (p = 0.78) | FUS6 (FUSCA 6) |
AT2G01760 | Experimental | FSW = 0.0180
| Class D:nucleus (p = 0.78) | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G22920 | Experimental | FSW = 0.4268
| Class D:nucleus (p = 0.78) | CSN5A (COP9 SIGNALOSOME 5A) |
AT5G42970 | ExperimentalAffinity Capture-WesternAffinity Capture-Westernaffinity technology | FSW = 0.3763
| Unknown | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT4G14110 | ExperimentalAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.4268
| Unknown | COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) METALLOENDOPEPTIDASE/ PROTEIN BINDING |
AT2G26990 | ExperimentalAffinity Capture-Western | FSW = 0.3115
| Unknown | FUS12 (FUSCA 12) |
AT1G02090 | ExperimentalAffinity Capture-Western | FSW = 0.2626
| Unknown | FUS5 (FUSCA 5) MAP KINASE KINASE |
AT5G46210 | Experimental | FSW = 0.1441
| Unknown | CUL4 (CULLIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G01650 | Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.0527
| Unknown | MACROPHAGE MIGRATION INHIBITORY FACTOR FAMILY PROTEIN / MIF FAMILY PROTEIN |
AT5G57170 | Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.0539
| Unknown | MACROPHAGE MIGRATION INHIBITORY FACTOR FAMILY PROTEIN / MIF FAMILY PROTEIN |
AT1G75950 | PredictedSynthetic Lethality | FSW = 0.0416
| Unknown | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G49880 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0970
| Unknown | ERV1/ALR FAMILY PROTEIN |
AT3G25980 | Predictedtwo hybridtwo hybridtwo hybridCo-expression | FSW = 0.0072
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G40820 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0154
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT1G11800 | Predictedtwo hybrid | FSW = 0.0504
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0095
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT4G11330 | Predictedtwo hybrid | FSW = 0.0185
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT5G10810 | Predictedtwo hybrid | FSW = 0.0914
| Unknown | ATER |
AT5G26040 | Predictedtwo hybrid | FSW = 0.0566
| Unknown | HDA2 HISTONE DEACETYLASE |
AT5G26640 | Predictedtwo hybrid | FSW = 0.0290
| Unknown | UNKNOWN PROTEIN |
AT5G37590 | Predictedtwo hybrid | FSW = 0.0588
| Unknown | BINDING |
AT3G05000 | Predictedtwo hybridtwo hybrid | FSW = 0.0139
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT4G17510 | Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.0194
| Unknown | UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3) UBIQUITIN THIOLESTERASE |
AT1G26830 | Predictedbiochemical | FSW = 0.0781
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G10570 | PredictedAffinity Capture-Western | FSW = 0.1462
| Unknown | UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9) CYSTEINE-TYPE ENDOPEPTIDASE/ UBIQUITIN THIOLESTERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454