Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G71440 - ( PFI (PFIFFERLING) )
27 Proteins interacs with AT1G71440Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20010 | PredictedSynthetic Lethality | FSW = 0.2593
| Class C:plastid | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G04820 | PredictedAffinity Capture-Westerninterologs mappingSynthetic Lethalitytwo hybrid | FSW = 0.1495
| Class C:plastid | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G14960 | PredictedAffinity Capture-Westernin vitroAffinity Capture-MStwo hybridinterologs mappingSynthetic LethalityAffinity Capture-Westerninteraction prediction | FSW = 0.1171
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.0344
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G12250 | PredictedSynthetic Lethality | FSW = 0.2118
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G20580 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0177
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT4G26110 | PredictedPhenotypic Enhancement | FSW = 0.0274
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT3G10220 | PredictedPhenotypic EnhancementAffinity Capture-Westerninterologs mappinginterologs mapping | FSW = 0.2667
| Unknown | TUBULIN FOLDING COFACTOR B |
AT2G36740 | PredictedPhenotypic Enhancement | FSW = 0.1379
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G75510 | PredictedPhenotypic Suppression | FSW = 0.0260
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT3G25980 | Predictedinteraction predictionSynthetic Lethalitysynthetic growth defectPhenotypic EnhancementCo-expression | FSW = 0.1455
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G36200 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.2552
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G60740 | PredictedAffinity Capture-Westernin vitrointerologs mapping | FSW = 0.1589
| Unknown | TTN1 (TITAN 1) TUBULIN BINDING |
AT1G04730 | Predictedinteraction predictionSynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.1167
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G08780 | Predictedinteraction predictionSynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.2179
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | Predictedinteraction predictionSynthetic LethalityPhenotypic Enhancement | FSW = 0.2034
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G60620 | PredictedPhenotypic Enhancement | FSW = 0.0432
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G30410 | Predictedinteraction predictionSynthetic Lethalityinterologs mappingPhenotypic Enhancement | FSW = 0.5045
| Unknown | KIS (KIESEL) UNFOLDED PROTEIN BINDING |
AT2G33560 | Predictedsynthetic growth defect | FSW = 0.1485
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G44580 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1711
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G22480 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1862
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G26020 | PredictedPhenotypic Enhancement | FSW = 0.2659
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT4G39050 | PredictedSynthetic Lethality | FSW = 0.2154
| Unknown | KINESIN-RELATED PROTEIN (MKRP2) |
AT5G23290 | Predictedinteraction predictionSynthetic LethalityPhenotypic Enhancement | FSW = 0.2165
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G45600 | PredictedPhenotypic Enhancement | FSW = 0.1371
| Unknown | GAS41 PROTEIN BINDING |
AT5G49510 | Predictedinteraction predictionSynthetic LethalityCo-expression | FSW = 0.1841
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454