Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G71820 - ( SEC6 )
37 Proteins interacs with AT1G71820| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G03540
   | Experimental | FSW = 0.0664
| Class A:plasma membraneClass D:plastid (p = 0.78)cytosol (p = 0.67) | ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING |
| AT3G10380
| Experimentalmolecular sievingconfocal microscopy | FSW = 0.0976
| Class A:plasma membraneClass D:cytosol (p = 0.67) | SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) |
| AT1G02130
| PredictedSynthetic Lethality | FSW = 0.1236
| Class C:plasma membrane | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
| AT1G12360
| PredictedSynthetic LethalityPhenotypic Suppression | FSW = 0.1953
| Class C:plasma membrane | KEU (KEULE) PROTEIN TRANSPORTER |
| AT5G49830
| Predictedin vitroin vivoin vivoin vitro | FSW = 0.0824
| Class C:plasma membrane | LOCATED IN PLASMA MEMBRANE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S VPS51/VPS67 (INTERPROIPR014812) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G103851) HAS 257 BLAST HITS TO 210 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 133 FUNGI - 61 PLANTS - 56 VIRUSES - 2 OTHER EUKARYOTES - 5 (SOURCE NCBI BLINK) |
| AT3G08530
| PredictedPhenotypic Enhancement | FSW = 0.0506
| Class C:plasma membrane | CLATHRIN HEAVY CHAIN PUTATIVE |
| AT3G05560
| Predictedinterologs mappinginterologs mappingSynthetic LethalityPhenotypic EnhancementPhenotypic Suppression | FSW = 0.0091
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
| AT1G29310
| Predictedinterologs mapping | FSW = 0.0382
| Class C:plasma membrane | P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
| AT3G51460
| PredictedSynthetic Rescue | FSW = 0.0293
| Class C:plasma membrane | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
| AT1G07670
| PredictedPhenotypic Suppressioninterologs mapping | FSW = 0.0657
| Class C:plasma membrane | CALCIUM-TRANSPORTING ATPASE |
| AT5G12370
| PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinterologs mapping | FSW = 0.1796
| Class C:plasma membrane | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
| AT3G09900
| PredictedSynthetic Lethality | FSW = 0.1713
| Class C:plasma membrane | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
| AT1G20970 | PredictedSynthetic Lethality | FSW = 0.1089
| Class C:plasma membrane | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
| AT1G31780
| Predictedtwo hybridtwo hybrid | FSW = 0.0204
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
| AT5G46860
| PredictedPhenotypic Enhancement | FSW = 0.0517
| Unknown | VAM3 SNAP RECEPTOR |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0058
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT1G29260
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0143
| Unknown | PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING |
| AT2G17520
| Predictedsynthetic growth defect | FSW = 0.0044
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
| AT5G66020
| PredictedSynthetic Rescue | FSW = 0.0414
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
| AT2G29100
| PredictedAffinity Capture-Western | FSW = 0.0504
| Unknown | ATGLR29 INTRACELLULAR LIGAND-GATED ION CHANNEL |
| AT5G41150
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0051
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
| AT3G29130
| Predictedtwo hybrid | FSW = 0.0552
| Unknown | UNKNOWN PROTEIN |
| AT1G21170 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-MSReconstituted Complexco-fractionationCo-fractionationPhenotypic Suppression | FSW = 0.2083
| Unknown | SEC5B |
| AT1G60780
| PredictedPhenotypic Enhancement | FSW = 0.0354
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
| AT1G17140
| PredictedPhenotypic Suppression | FSW = 0.0293
| Unknown | TROPOMYOSIN-RELATED |
| AT3G56640
| PredictedSynthetic Lethalityco-fractionationCo-fractionationco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic LethalityCo-fractionationco-fractionationCo-fractionationSynthetic LethalityAffinity Capture-MS | FSW = 0.1473
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
| AT5G13150
| PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1013
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
| AT5G28740
| PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
| AT1G78720
| Predictedinterologs mapping | FSW = 0.0775
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
| AT2G27600
| PredictedPhenotypic Enhancement | FSW = 0.0089
| Unknown | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT5G09550
| PredictedSynthetic Lethality | FSW = 0.1465
| Unknown | RAB GDP-DISSOCIATION INHIBITOR |
| AT1G54090
| PredictedAffinity Capture-MS | FSW = 0.1938
| Unknown | ATEXO70D2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D2) PROTEIN BINDING |
| AT1G10730
| PredictedPhenotypic Enhancement | FSW = 0.0423
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
| AT1G32270
| PredictedPhenotypic Enhancement | FSW = 0.0544
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
| AT1G02010
| PredictedSynthetic LethalityPhenotypic Suppression | FSW = 0.1768
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
| AT2G44100
| PredictedSynthetic Lethality | FSW = 0.0963
| Unknown | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR |
| AT5G10660
| PredictedSynthetic Rescue | FSW = 0.0418
| Unknown | CALMODULIN-BINDING PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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