Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G72330 - ( ALAAT2 (ALANINE AMINOTRANSFERASE 2) ATP binding / L-alanine2-oxoglutarate aminotransferase )
29 Proteins interacs with AT1G72330Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07930 | Predictedtwo hybrid | FSW = 0.0209
| Class C:mitochondrion | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G23990 | PredictedAffinity Capture-MS | FSW = 0.0160
| Class C:mitochondrion | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT1G17290 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0994
| Class C:mitochondrion | ALAAT1 (ALANINE AMINOTRANSFERAS) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT4G21980 | Predictedtwo hybridAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0501
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0183
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G23310 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0866
| Unknown | GGT1 (GLUTAMATEGLYOXYLATE AMINOTRANSFERASE) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G52640 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0056
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G70580 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0420
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.0667
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G33110 | Predictedtwo hybrid | FSW = 0.0324
| Unknown | ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723) |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.0792
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G10660 | Predictedtwo hybrid | FSW = 0.0298
| Unknown | CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G57550 | PredictedAffinity Capture-MS | FSW = 0.1932
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G03740 | Predictedtwo hybridtwo hybrid | FSW = 0.0833
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G08780 | PredictedSynthetic Lethality | FSW = 0.0478
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | PredictedSynthetic Lethality | FSW = 0.0325
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.1321
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0312
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G47570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1266
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G22480 | PredictedSynthetic Lethality | FSW = 0.0437
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G62960 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT5G16040 | Predictedtwo hybrid | FSW = 0.0253
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G20060 | Predictedtwo hybrid | FSW = 0.0929
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G23290 | PredictedSynthetic Lethality | FSW = 0.0376
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G49510 | PredictedSynthetic Lethality | FSW = 0.0373
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT2G34250 | Predictedtwo hybrid | FSW = 0.0506
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT4G26810 | Predictedtwo hybrid | FSW = 0.0560
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G14470 | PredictedGene fusion method | FSW = 0.0282
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454