Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G72370 - ( P40 structural constituent of ribosome )
44 Proteins interacs with AT1G72370Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0627
| Class C:plastidplasma membranenucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT5G20290 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0851
| Class C:plastidplasma membranenucleus | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT2G33210 | PredictedAffinity Capture-MS | FSW = 0.0108
| Class C:plastidplasma membrane | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0741
| Class C:plastidplasma membrane | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G22890 | PredictedSynthetic Lethality | FSW = 0.0161
| Class C:plastidplasma membrane | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT2G36620 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0544
| Class C:plastidplasma membrane | RPL24A (RIBOSOMAL PROTEIN L24) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G15200 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0927
| Class C:plastidnucleus | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT5G36880 | PredictedAffinity Capture-MS | FSW = 0.0500
| Class C:plastid | ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE |
AT5G53460 | PredictedAffinity Capture-MS | FSW = 0.0300
| Class C:plastid | GLT1 GLUTAMATE SYNTHASE (NADH) |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0370
| Class C:plastid | DNA HELICASE-RELATED |
AT3G04770 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5030
| Class C:plastid | RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G11630 | Predictedsynthetic growth defect | FSW = 0.0072
| Class C:plastid | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G48860 | PredictedAffinity Capture-MS | FSW = 0.0661
| Class C:plastid | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT2G04390 | PredictedAffinity Capture-MS | FSW = 0.0377
| Class C:plasma membranenucleus | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT3G53890 | PredictedPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-Westerntwo hybridCo-expression | FSW = 0.0571
| Class C:plasma membranecytosol | 40S RIBOSOMAL PROTEIN S21 (RPS21B) |
AT1G04750 | PredictedSynthetic Lethality | FSW = 0.0294
| Class C:plasma membrane | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G11420 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0483
| Class C:plasma membrane | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT4G38600 | PredictedAffinity Capture-MS | FSW = 0.0278
| Class C:plasma membrane | KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE |
AT4G19610 | PredictedAffinity Capture-MS | FSW = 0.0513
| Class C:nucleus | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G52470 | PredictedShared biological functionCo-expression | FSW = 0.0622
| Class C:nucleus | FIB1 (FIBRILLARIN 1) SNORNA BINDING |
AT4G25630 | PredictedShared biological functionCo-expression | FSW = 0.0455
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT1G04510 | PredictedCo-purificationCo-expression | FSW = 0.0132
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G21700 | Predictedsynthetic growth defect | FSW = 0.0343
| Class C:nucleus | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G13980 | Predictedbiochemical | FSW = 0.0235
| Class C:nucleus | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT5G25780 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT2G20510 | PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT1G55860 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0556
| Unknown | UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.0538
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0279
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT2G46520 | PredictedAffinity Capture-MS | FSW = 0.0544
| Unknown | CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE |
AT2G18990 | Predictedtwo hybridtwo hybrid | FSW = 0.0224
| Unknown | TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG) |
AT1G66590 | Predictedsynthetic growth defect | FSW = 0.0241
| Unknown | COX19 FAMILY PROTEIN |
AT4G27130 | PredictedSynthetic Lethality | FSW = 0.0273
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.0652
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT5G08420 | PredictedAffinity Capture-MS | FSW = 0.0699
| Unknown | RNA BINDING |
AT5G27970 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | BINDING |
AT3G51270 | PredictedAffinity Capture-MS | FSW = 0.1304
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
AT3G24080 | PredictedAffinity Capture-MS | FSW = 0.0767
| Unknown | KRR1 FAMILY PROTEIN |
AT2G22480 | PredictedAffinity Capture-MS | FSW = 0.0304
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT1G55150 | PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
AT1G31660 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0991
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT1G10170 | PredictedAffinity Capture-MS | FSW = 0.0541
| Unknown | ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G55190 | Predictedtwo hybridCo-expression | FSW = 0.0129
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT2G32850 | Predictedtwo hybrid | FSW = 0.0214
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454