Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G72370 - ( P40 structural constituent of ribosome )

44 Proteins interacs with AT1G72370
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09630

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0627

Class C:

plastid

plasma membrane

nucleus

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT5G20290

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0851

Class C:

plastid

plasma membrane

nucleus

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT2G33210

Predicted

Affinity Capture-MS

FSW = 0.0108

Class C:

plastid

plasma membrane

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT1G04820Predicted

Affinity Capture-MS

FSW = 0.0741

Class C:

plastid

plasma membrane

TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G22890

Predicted

Synthetic Lethality

FSW = 0.0161

Class C:

plastid

plasma membrane

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT2G36620

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0544

Class C:

plastid

plasma membrane

RPL24A (RIBOSOMAL PROTEIN L24) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G15200

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0927

Class C:

plastid

nucleus

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT5G36880

Predicted

Affinity Capture-MS

FSW = 0.0500

Class C:

plastid

ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE
AT5G53460

Predicted

Affinity Capture-MS

FSW = 0.0300

Class C:

plastid

GLT1 GLUTAMATE SYNTHASE (NADH)
AT3G49830

Predicted

Affinity Capture-MS

FSW = 0.0370

Class C:

plastid

DNA HELICASE-RELATED
AT3G04770

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5030

Class C:

plastid

RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G11630

Predicted

synthetic growth defect

FSW = 0.0072

Class C:

plastid

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT1G48860

Predicted

Affinity Capture-MS

FSW = 0.0661

Class C:

plastid

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT2G04390

Predicted

Affinity Capture-MS

FSW = 0.0377

Class C:

plasma membrane

nucleus

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT3G53890

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Affinity Capture-Western

two hybrid

Co-expression

FSW = 0.0571

Class C:

plasma membrane

cytosol

40S RIBOSOMAL PROTEIN S21 (RPS21B)
AT1G04750

Predicted

Synthetic Lethality

FSW = 0.0294

Class C:

plasma membrane

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT4G11420

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0483

Class C:

plasma membrane

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT4G38600

Predicted

Affinity Capture-MS

FSW = 0.0278

Class C:

plasma membrane

KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE
AT4G19610Predicted

Affinity Capture-MS

FSW = 0.0513

Class C:

nucleus

RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G52470

Predicted

Shared biological function

Co-expression

FSW = 0.0622

Class C:

nucleus

FIB1 (FIBRILLARIN 1) SNORNA BINDING
AT4G25630

Predicted

Shared biological function

Co-expression

FSW = 0.0455

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G04510

Predicted

Co-purification

Co-expression

FSW = 0.0132

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G21700

Predicted

synthetic growth defect

FSW = 0.0343

Class C:

nucleus

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT4G13980

Predicted

biochemical

FSW = 0.0235

Class C:

nucleus

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT5G25780

Predicted

Affinity Capture-MS

FSW = 0.0308

Unknown

EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT2G20510

Predicted

Affinity Capture-MS

FSW = 0.0256

Unknown

ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE
AT1G55860

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.0556

Unknown

UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE
AT1G79750

Predicted

Affinity Capture-MS

FSW = 0.0538

Unknown

ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0279

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT2G46520

Predicted

Affinity Capture-MS

FSW = 0.0544

Unknown

CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE
AT2G18990

Predicted

two hybrid

two hybrid

FSW = 0.0224

Unknown

TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG)
AT1G66590

Predicted

synthetic growth defect

FSW = 0.0241

Unknown

COX19 FAMILY PROTEIN
AT4G27130

Predicted

Synthetic Lethality

FSW = 0.0273

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT1G03530

Predicted

Affinity Capture-MS

FSW = 0.0652

Unknown

NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT5G08420

Predicted

Affinity Capture-MS

FSW = 0.0699

Unknown

RNA BINDING
AT5G27970Predicted

Affinity Capture-MS

FSW = 0.0115

Unknown

BINDING
AT3G51270

Predicted

Affinity Capture-MS

FSW = 0.1304

Unknown

ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT3G24080

Predicted

Affinity Capture-MS

FSW = 0.0767

Unknown

KRR1 FAMILY PROTEIN
AT2G22480

Predicted

Affinity Capture-MS

FSW = 0.0304

Unknown

PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE
AT1G55150

Predicted

Affinity Capture-MS

FSW = 0.0370

Unknown

DEAD BOX RNA HELICASE PUTATIVE (RH20)
AT1G31660

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0991

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G10170

Predicted

Affinity Capture-MS

FSW = 0.0541

Unknown

ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT5G55190

Predicted

two hybrid

Co-expression

FSW = 0.0129

Unknown

RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT2G32850

Predicted

two hybrid

FSW = 0.0214

Unknown

PROTEIN KINASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454