Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G72710 - ( CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )

6 Proteins interacs with AT1G72710
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G57015

Predicted

Phylogenetic profile method

FSW = 0.0222

Class C:

nucleus

cytosol

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G26600

Predicted

Reconstituted Complex

FSW = 0.0269

Class C:

nucleus

NUCLEOLAR PROTEIN PUTATIVE
AT4G26100

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1469

Unknown

CK1 (CASEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G51040

Predicted

Reconstituted Complex

FSW = 0.0289

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT3G05760

Predicted

Reconstituted Complex

FSW = 0.0214

Unknown

NUCLEIC ACID BINDING / ZINC ION BINDING
AT2G26490

Predicted

Gene fusion method

FSW = 0.0618

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454