Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G72730 - ( eukaryotic translation initiation factor 4A putative / eIF-4A putative )

63 Proteins interacs with AT1G72730
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G54270

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0957

Class C:

vacuole

plasma membrane

EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT5G09510

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0159

Class C:

vacuole

nucleus

40S RIBOSOMAL PROTEIN S15 (RPS15D)
AT5G60640

Predicted

Affinity Capture-MS

FSW = 0.0235

Class C:

vacuole

ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE
AT2G01690

Predicted

Affinity Capture-MS

FSW = 0.0145

Class C:

vacuole

BINDING
AT5G07090

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0093

Class C:

vacuole

40S RIBOSOMAL PROTEIN S4 (RPS4B)
AT1G07890

Predicted

Affinity Capture-Western

FSW = 0.0041

Class C:

plasma membrane

APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE
AT3G09820

Predicted

Affinity Capture-MS

FSW = 0.1424

Class C:

plasma membrane

ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING
AT3G25800

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1436

Class C:

plasma membrane

PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT5G25754Predicted

Affinity Capture-MS

FSW = 0.0571

Class C:

plasma membrane

UNKNOWN PROTEIN
AT4G04720

Predicted

Affinity Capture-MS

FSW = 0.0887

Class C:

plasma membrane

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G11420

Predicted

Affinity Capture-MS

FSW = 0.0667

Class C:

plasma membrane

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT5G42790

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0100

Class C:

plasma membrane

PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G53110

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1537

Class C:

plasma membrane

LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE
AT5G26340

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0020

Class C:

plasma membrane

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G07790

Predicted

Affinity Capture-MS

FSW = 0.0935

Class C:

nucleus

HTB1 DNA BINDING
AT4G14340

Predicted

Affinity Capture-MS

FSW = 0.1372

Class C:

nucleus

CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G40290

Predicted

Synthetic Lethality

FSW = 0.0775

Class C:

nucleus

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT3G19760

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2744

Class C:

nucleus

EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE / DEAD BOX RNA HELICASE PUTATIVE
AT3G13920

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1886

Class C:

nucleus

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT5G11170

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.1793

Class C:

nucleus

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G79020

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0204

Class C:

nucleus

TRANSCRIPTION FACTOR-RELATED
AT3G50670

Predicted

Phenotypic Suppression

FSW = 0.0152

Class C:

nucleus

U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G07820

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

co-fractionation

Co-fractionation

Synthetic Lethality

FSW = 0.1698

Class C:

extracellular

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G48170

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0073

Unknown

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G35420

Predicted

Affinity Capture-MS

FSW = 0.0597

Unknown

DIENELACTONE HYDROLASE FAMILY PROTEIN
AT1G22940

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0162

Unknown

TH1 (THIAMINE REQUIRING 1) HYDROXYMETHYLPYRIMIDINE KINASE/ PHOSPHOMETHYLPYRIMIDINE KINASE/ THIAMIN-PHOSPHATE DIPHOSPHORYLASE
AT1G66430

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0173

Unknown

PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN
AT5G49030

Predicted

Affinity Capture-MS

FSW = 0.0337

Unknown

OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT2G42520

Predicted

Affinity Capture-MS

FSW = 0.0125

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT3G54300

Predicted

Affinity Capture-MS

FSW = 0.1467

Unknown

ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)
AT2G38960

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

FSW = 0.1427

Unknown

AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT3G08730

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.0134

Unknown

PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G07780

Predicted

Phenotypic Suppression

FSW = 0.0121

Unknown

PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1) PHOSPHORIBOSYLANTHRANILATE ISOMERASE
AT1G10840

Predicted

Affinity Capture-MS

FSW = 0.0690

Unknown

TIF3H1 TRANSLATION INITIATION FACTOR
AT1G29590

Predicted

Affinity Capture-MS

FSW = 0.0768

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE
AT1G49760

Predicted

Affinity Capture-MS

FSW = 0.0217

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT2G24050

Predicted

Affinity Capture-MS

FSW = 0.0376

Unknown

MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN
AT3G44010Predicted

Affinity Capture-MS

FSW = 0.0234

Unknown

40S RIBOSOMAL PROTEIN S29 (RPS29B)
AT4G20980

Predicted

Affinity Capture-MS

FSW = 0.0448

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE
AT4G33250

Predicted

Affinity Capture-MS

FSW = 0.0980

Unknown

EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K) TRANSLATION INITIATION FACTOR
AT5G15610

Predicted

Affinity Capture-MS

FSW = 0.0560

Unknown

PROTEASOME FAMILY PROTEIN
AT1G02100

Predicted

Phenotypic Suppression

FSW = 0.0285

Unknown

LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT1G06830

Predicted

Phenotypic Suppression

FSW = 0.0279

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT1G08910Predicted

Synthetic Lethality

FSW = 0.0192

Unknown

EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING
AT1G59580

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0758

Unknown

ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE
AT2G20410

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Rescue

Phenotypic Suppression

FSW = 0.1882

Unknown

ACTIVATING SIGNAL COINTEGRATOR-RELATED
AT2G31060

Predicted

Synthetic Lethality

synthetic growth defect

Synthetic Lethality

Affinity Capture-MS

FSW = 0.2098

Unknown

ELONGATION FACTOR FAMILY PROTEIN
AT3G53880

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1362

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT4G21490

Predicted

Phenotypic Enhancement

FSW = 0.0077

Unknown

NDB3 NADH DEHYDROGENASE
AT4G37490

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

interologs mapping

FSW = 0.1111

Unknown

CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G74320

Predicted

Phenotypic Suppression

FSW = 0.0518

Unknown

CHOLINE KINASE PUTATIVE
AT2G39590

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0061

Unknown

40S RIBOSOMAL PROTEIN S15A (RPS15AC)
AT2G44820

Predicted

Phenotypic Suppression

FSW = 0.0168

Unknown

UNKNOWN PROTEIN
AT2G46230

Predicted

Phenotypic Suppression

FSW = 0.0537

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF652 (INTERPROIPR006984) NUCLEOTIDE BINDING PROTEIN PINC (INTERPROIPR006596) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G265301) HAS 493 BLAST HITS TO 493 PROTEINS IN 165 SPECIES ARCHAE - 21 BACTERIA - 0 METAZOA - 192 FUNGI - 143 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 84 (SOURCE NCBI BLINK)
AT3G05540

Predicted

Phenotypic Suppression

FSW = 0.0192

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)
AT4G21480

Predicted

Phenotypic Suppression

FSW = 0.0254

Unknown

CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G31985

Predicted

Synthetic Lethality

Synthetic Lethality

Affinity Capture-MS

FSW = 0.1951

Unknown

60S RIBOSOMAL PROTEIN L39 (RPL39C)
AT5G15070

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0111

Unknown

ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT1G51380

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2689

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE
AT1G16280

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0625

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G60990

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1898

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH10)
AT5G11200

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.1613

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G02065

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.2350

Unknown

DEAD/DEAH BOX HELICASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454