Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G72730 - ( eukaryotic translation initiation factor 4A putative / eIF-4A putative )
63 Proteins interacs with AT1G72730Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G54270 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0957
| Class C:vacuoleplasma membrane | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT5G09510 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0159
| Class C:vacuolenucleus | 40S RIBOSOMAL PROTEIN S15 (RPS15D) |
AT5G60640 | PredictedAffinity Capture-MS | FSW = 0.0235
| Class C:vacuole | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
AT2G01690 | PredictedAffinity Capture-MS | FSW = 0.0145
| Class C:vacuole | BINDING |
AT5G07090 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0093
| Class C:vacuole | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT1G07890 | PredictedAffinity Capture-Western | FSW = 0.0041
| Class C:plasma membrane | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT3G09820 | PredictedAffinity Capture-MS | FSW = 0.1424
| Class C:plasma membrane | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT3G25800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1436
| Class C:plasma membrane | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G25754 | PredictedAffinity Capture-MS | FSW = 0.0571
| Class C:plasma membrane | UNKNOWN PROTEIN |
AT4G04720 | PredictedAffinity Capture-MS | FSW = 0.0887
| Class C:plasma membrane | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G11420 | PredictedAffinity Capture-MS | FSW = 0.0667
| Class C:plasma membrane | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT5G42790 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0100
| Class C:plasma membrane | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G53110 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1537
| Class C:plasma membrane | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT5G26340 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0020
| Class C:plasma membrane | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G07790 | PredictedAffinity Capture-MS | FSW = 0.0935
| Class C:nucleus | HTB1 DNA BINDING |
AT4G14340 | PredictedAffinity Capture-MS | FSW = 0.1372
| Class C:nucleus | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G40290 | PredictedSynthetic Lethality | FSW = 0.0775
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT3G19760 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2744
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE / DEAD BOX RNA HELICASE PUTATIVE |
AT3G13920 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1886
| Class C:nucleus | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT5G11170 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1793
| Class C:nucleus | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G79020 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0204
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT3G50670 | PredictedPhenotypic Suppression | FSW = 0.0152
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G07820 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.1698
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G48170 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0073
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G35420 | PredictedAffinity Capture-MS | FSW = 0.0597
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT1G22940 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0162
| Unknown | TH1 (THIAMINE REQUIRING 1) HYDROXYMETHYLPYRIMIDINE KINASE/ PHOSPHOMETHYLPYRIMIDINE KINASE/ THIAMIN-PHOSPHATE DIPHOSPHORYLASE |
AT1G66430 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0173
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
AT5G49030 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT2G42520 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT3G54300 | PredictedAffinity Capture-MS | FSW = 0.1467
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT2G38960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1427
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT3G08730 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0134
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G07780 | PredictedPhenotypic Suppression | FSW = 0.0121
| Unknown | PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1) PHOSPHORIBOSYLANTHRANILATE ISOMERASE |
AT1G10840 | PredictedAffinity Capture-MS | FSW = 0.0690
| Unknown | TIF3H1 TRANSLATION INITIATION FACTOR |
AT1G29590 | PredictedAffinity Capture-MS | FSW = 0.0768
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT2G24050 | PredictedAffinity Capture-MS | FSW = 0.0376
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT3G44010 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | 40S RIBOSOMAL PROTEIN S29 (RPS29B) |
AT4G20980 | PredictedAffinity Capture-MS | FSW = 0.0448
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE |
AT4G33250 | PredictedAffinity Capture-MS | FSW = 0.0980
| Unknown | EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K) TRANSLATION INITIATION FACTOR |
AT5G15610 | PredictedAffinity Capture-MS | FSW = 0.0560
| Unknown | PROTEASOME FAMILY PROTEIN |
AT1G02100 | PredictedPhenotypic Suppression | FSW = 0.0285
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G06830 | PredictedPhenotypic Suppression | FSW = 0.0279
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G08910 | PredictedSynthetic Lethality | FSW = 0.0192
| Unknown | EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING |
AT1G59580 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0758
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G20410 | PredictedSynthetic LethalitySynthetic LethalitySynthetic RescuePhenotypic Suppression | FSW = 0.1882
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G31060 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic LethalityAffinity Capture-MS | FSW = 0.2098
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT3G53880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1362
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G21490 | PredictedPhenotypic Enhancement | FSW = 0.0077
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G37490 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.1111
| Unknown | CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G74320 | PredictedPhenotypic Suppression | FSW = 0.0518
| Unknown | CHOLINE KINASE PUTATIVE |
AT2G39590 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0061
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
AT2G44820 | PredictedPhenotypic Suppression | FSW = 0.0168
| Unknown | UNKNOWN PROTEIN |
AT2G46230 | PredictedPhenotypic Suppression | FSW = 0.0537
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF652 (INTERPROIPR006984) NUCLEOTIDE BINDING PROTEIN PINC (INTERPROIPR006596) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G265301) HAS 493 BLAST HITS TO 493 PROTEINS IN 165 SPECIES ARCHAE - 21 BACTERIA - 0 METAZOA - 192 FUNGI - 143 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 84 (SOURCE NCBI BLINK) |
AT3G05540 | PredictedPhenotypic Suppression | FSW = 0.0192
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
AT4G21480 | PredictedPhenotypic Suppression | FSW = 0.0254
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G31985 | PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-MS | FSW = 0.1951
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT5G15070 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0111
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT1G51380 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2689
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT1G16280 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0625
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G60990 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1898
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH10) |
AT5G11200 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1613
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G02065 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2350
| Unknown | DEAD/DEAH BOX HELICASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454