Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G73190 - ( TIP31 water channel )

13 Proteins interacs with AT1G73190
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G09590

Predicted

Synthetic Lethality

FSW = 0.0497

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0188

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G10070

Predicted

biochemical

FSW = 0.0518

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT1G29330

Predicted

Synthetic Lethality

FSW = 0.0666

Unknown

ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT1G17810

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0515

Unknown

BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT1G34580

Predicted

Affinity Capture-Western

FSW = 0.0464

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G06790

Predicted

two hybrid

FSW = 0.0143

Unknown

RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G10210

Predicted

biochemical

FSW = 0.0250

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G33040

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1309

Unknown

NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)
AT2G34180

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1228

Unknown

CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G24830

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0848

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G25900

Predicted

synthetic growth defect

FSW = 0.0279

Unknown

HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE
AT4G26510

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1761

Unknown

ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454