Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G73740 - ( glycosyl transferase family 28 protein )

12 Proteins interacs with AT1G73740
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G27850

Predicted

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FSW = 0.0242

Unknown

RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G24240

Predicted

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FSW = 0.1263

Unknown

RIBOSOMAL PROTEIN L19 FAMILY PROTEIN
AT1G32990

Predicted

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FSW = 0.0776

Unknown

PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G78630

Predicted

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FSW = 0.1166

Unknown

EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
ATCG00160Predicted

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FSW = 0.0648

Unknown

CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00380Predicted

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FSW = 0.0751

Unknown

CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
AT3G10370

Predicted

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FSW = 0.0523

Unknown

SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE
AT1G63680

Predicted

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FSW = 0.1731

Unknown

MURE ATP BINDING / ACID-AMINO ACID LIGASE/ LIGASE
AT3G49080

Predicted

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FSW = 0.0896

Unknown

RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT5G23535

Predicted

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FSW = 0.0427

Unknown

KOW DOMAIN-CONTAINING PROTEIN
AT5G48440

Predicted

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FSW = 0.0618

Unknown

OXIDOREDUCTASE
AT5G64650

Predicted

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FSW = 0.1184

Unknown

RIBOSOMAL PROTEIN L17 FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454