Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G73820 - ( Ssu72-like family protein )
43 Proteins interacs with AT1G73820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedSynthetic Lethality | FSW = 0.0255
| Class C:plastid | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G35800 | PredictedProtein-peptideSynthetic Rescue | FSW = 0.1060
| Class C:plastid | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G04910 | PredictedSynthetic Lethality | FSW = 0.0046
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G48750 | PredictedSynthetic Rescue | FSW = 0.0213
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G12110 | PredictedSynthetic Lethality | FSW = 0.0151
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G10330 | PredictedPhenotypic EnhancementReconstituted Complexinterologs mappingPhenotypic EnhancementSynthetic RescueAffinity Capture-WesternSynthetic Lethality | FSW = 0.0815
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT5G67270 | PredictedSynthetic Lethality | FSW = 0.0505
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT1G18040 | PredictedSynthetic LethalityAffinity Capture-WesternCo-expression | FSW = 0.0506
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT3G12810 | PredictedPhenotypic Enhancement | FSW = 0.0898
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G17980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3160
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT2G41630 | PredictedPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-Westerninterologs mappingReconstituted ComplexSynthetic Lethality | FSW = 0.0480
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT2G36740 | PredictedPhenotypic Enhancement | FSW = 0.0832
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G44950 | PredictedPhenotypic Enhancement | FSW = 0.0463
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.0422
| Unknown | ATEB1A MICROTUBULE BINDING |
AT5G23880 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complextwo hybridinteraction predictionCo-expression | FSW = 0.3178
| Unknown | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
AT5G19910 | PredictedPhenotypic Enhancement | FSW = 0.0936
| Unknown | SOH1 FAMILY PROTEIN |
AT5G51660 | PredictedAffinity Capture-MS | FSW = 0.3644
| Unknown | CPSF160 NUCLEIC ACID BINDING |
AT4G21710 | Predictedtwo hybridSynthetic RescueReconstituted ComplexReconstituted ComplexSynthetic Rescue | FSW = 0.0814
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G09020 | PredictedPhenotypic Enhancement | FSW = 0.0116
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G21570 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2911
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT1G61010 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2893
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.1060
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G73960 | PredictedAffinity Capture-MS | FSW = 0.1029
| Unknown | TAF2 (TBP-ASSOCIATED FACTOR 2) METALLOPEPTIDASE/ ZINC ION BINDING |
AT2G39840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0952
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0165
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT3G60860 | PredictedSynthetic Lethality | FSW = 0.0098
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT5G10270 | PredictedSynthetic Rescue | FSW = 0.0861
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G13480 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1877
| Unknown | FY PROTEIN BINDING |
AT5G14530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2753
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G47430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4376
| Unknown | ZINC ION BINDING |
AT5G61150 | PredictedPhenotypic Enhancement | FSW = 0.0780
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT1G79890 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1223
| Unknown | HELICASE-RELATED |
AT2G39260 | PredictedPhenotypic Enhancement | FSW = 0.0105
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
AT4G04885 | PredictedAffinity Capture-Western | FSW = 0.1764
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.0665
| Unknown | BINDING |
AT5G58003 | Predictedinterologs mapping | FSW = 0.1145
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
AT5G63670 | PredictedSynthetic Rescue | FSW = 0.1482
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT4G17410 | PredictedAffinity Capture-MS | FSW = 0.4090
| Unknown | ZINC ION BINDING |
AT1G73840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3953
| Unknown | ESP1 (ENHANCED SILENCING PHENOTYPE 1) |
AT2G29400 | PredictedAffinity Capture-MS | FSW = 0.1100
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G66500 | PredictedAffinity Capture-Western | FSW = 0.2389
| Unknown | ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN |
AT1G01960 | PredictedSynthetic Lethality | FSW = 0.0108
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT1G20320 | PredictedSynthetic Rescue | FSW = 0.0887
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454