Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G74150 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 14 plant structures EXPRESSED DURING 6 growth stages CONTAINS InterPro DOMAIN/s Galactose oxidase/kelch beta-propeller (InterProIPR011043) Kelch repeat type 1 (InterProIPR006652) Kelch repeat type 2 (InterProIPR011498) Kelch-type beta propeller (InterProIPR015915) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G186101) Has 8525 Blast hits to 4249 proteins in 295 species Archae - 10 Bacteria - 313 Metazoa - 3989 Fungi - 859 Plants - 1220 Viruses - 19 Other Eukaryotes - 2115 (source NCBI BLink) )

19 Proteins interacs with AT1G74150
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G08670

Predicted

two hybrid

FSW = 0.0197

Unknown

ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM
ATCG00480Predicted

two hybrid

FSW = 0.0455

Unknown

CHLOROPLAST-ENCODED GENE FOR BETA SUBUNIT OF ATP SYNTHASE
AT3G47370

Predicted

two hybrid

FSW = 0.0317

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT1G27970

Predicted

two hybrid

FSW = 0.0305

Unknown

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT5G62300

Predicted

two hybrid

FSW = 0.0328

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT1G27310

Predicted

two hybrid

FSW = 0.1159

Unknown

NTF2A (NUCLEAR TRANSPORT FACTOR 2A) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT1G11570

Predicted

two hybrid

FSW = 0.2051

Unknown

NUCLEAR TRANSPORT FACTOR 2 (NTF2) PUTATIVE
AT1G13060

Predicted

two hybrid

FSW = 0.0301

Unknown

PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G23380

Predicted

two hybrid

FSW = 0.0331

Unknown

CLF (CURLY LEAF) TRANSCRIPTION FACTOR
AT4G02020

Predicted

two hybrid

FSW = 0.0242

Unknown

SWN (SWINGER) TRANSCRIPTION FACTOR
AT2G35320

Predicted

two hybrid

FSW = 0.0214

Unknown

ATEYA (ARABIDOPSIS THALIANA EYES ABSENT HOMOLOG) PROTEIN TYROSINE PHOSPHATASE METAL-DEPENDENT
AT5G11640

Predicted

two hybrid

two hybrid

FSW = 0.0345

Unknown

EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) HAS 154 BLAST HITS TO 154 PROTEINS IN 61 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 125 FUNGI - 0 PLANTS - 20 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK)
AT3G16090

Predicted

two hybrid

two hybrid

FSW = 0.0426

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT3G26340

Predicted

two hybrid

FSW = 0.0870

Unknown

20S PROTEASOME BETA SUBUNIT E PUTATIVE
AT4G18590

Predicted

two hybrid

FSW = 0.0356

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S REPLICATION FACTOR A PROTEIN 3 (INTERPROIPR013970) NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G526302) HAS 58 BLAST HITS TO 58 PROTEINS IN 25 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 26 FUNGI - 2 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK)
AT5G51130

Predicted

two hybrid

two hybrid

FSW = 0.0345

Unknown

METHYLTRANSFERASE
AT4G33240

Predicted

two hybrid

Reconstituted Complex

Affinity Capture-Western

biochemical

FSW = 0.0130

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT3G45030Predicted

two hybrid

FSW = 0.1481

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20A)
AT1G64310

Predicted

Gene fusion method

FSW = 0.0410

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454