Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G74250 - ( DNAJ heat shock N-terminal domain-containing protein )
45 Proteins interacs with AT1G74250Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.2813
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.3833
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT4G01370 | Predictedbiochemical | FSW = 0.0071
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.4342
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT2G03880 | PredictedGene fusion method | FSW = 0.0985
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G06290 | Predictedbiochemical | FSW = 0.0035
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT5G15450 | PredictedAffinity Capture-MS | FSW = 0.1220
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G22060 | Predictedinterologs mapping | FSW = 0.0093
| Unknown | ATJ2 PROTEIN BINDING |
AT4G08690 | PredictedAffinity Capture-MS | FSW = 0.4180
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G12480 | Predictedbiochemical | FSW = 0.0127
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G45380 | PredictedAffinity Capture-MS | FSW = 0.3872
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT3G46900 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.4196
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT2G44680 | PredictedPhenotypic Enhancement | FSW = 0.0027
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT5G59960 | PredictedAffinity Capture-MS | FSW = 0.5326
| Unknown | UNKNOWN PROTEIN |
AT3G57150 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0871
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G30810 | PredictedAffinity Capture-MS | FSW = 0.4876
| Unknown | TRANSCRIPTION FACTOR |
AT3G08980 | PredictedAffinity Capture-MS | FSW = 0.4449
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1334
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G05830 | PredictedAffinity Capture-MS | FSW = 0.3414
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G06790 | PredictedAffinity Capture-MS | FSW = 0.3370
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G21370 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2076
| Unknown | UNKNOWN PROTEIN |
AT1G43860 | PredictedAffinity Capture-MS | FSW = 0.1065
| Unknown | TRANSCRIPTION FACTOR |
AT2G20410 | PredictedAffinity Capture-MS | FSW = 0.4295
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G29680 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5007
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT2G29940 | PredictedAffinity Capture-MS | FSW = 0.5365
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G37840 | Predictedbiochemical | FSW = 0.0166
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G01090 | Predictedbiochemical | FSW = 0.0062
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3510
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G11450 | Predictedinterologs mapping | FSW = 0.0088
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
AT3G20800 | PredictedPhenotypic Enhancement | FSW = 0.0284
| Unknown | RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE |
AT3G52590 | PredictedAffinity Capture-MS | FSW = 0.4890
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G53880 | PredictedCo-purification | FSW = 0.3363
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G00810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4192
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G31770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5902
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT5G16960 | PredictedAffinity Capture-MS | FSW = 0.4314
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G49970 | PredictedAffinity Capture-MS | FSW = 0.1594
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G59890 | PredictedAffinity Capture-MS | FSW = 0.3108
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT3G21060 | PredictedPhenotypic Enhancement | FSW = 0.0042
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22480 | PredictedPhenotypic Suppression | FSW = 0.0085
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT4G29910 | PredictedAffinity Capture-MS | FSW = 0.4606
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G41700 | PredictedPhenotypic Enhancement | FSW = 0.0091
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G06030 | Predictedtwo hybrid | FSW = 0.0196
| Unknown | ANP3 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G63130 | PredictedGene fusion method | FSW = 0.0716
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G62670 | PredictedGene fusion method | FSW = 0.0716
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454