Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G74310 - ( ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding )
35 Proteins interacs with AT1G74310Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0029
| Unknown | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G12580 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0604
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT1G31780 | PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT1G18070 | Predictedinteraction predictionReconstituted ComplexReconstituted ComplexColocalization | FSW = 0.0478
| Unknown | EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT1G16030 | Predictedinterologs mappingPhenotypic EnhancementShared biological functionCo-expression | FSW = 0.0743
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT3G20550 | PredictedPhenotypic Suppression | FSW = 0.0115
| Unknown | DDL (DAWDLE) |
AT5G50920 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2017
| Unknown | CLPC1 ATP BINDING / ATP-DEPENDENT PEPTIDASE/ ATPASE |
AT3G48870 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1143
| Unknown | HSP93-III ATP BINDING / ATPASE/ DNA BINDING / NUCLEASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G25140 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0714
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G80380 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | PHOSPHORIBULOKINASE/URIDINE KINASE-RELATED |
AT5G15450 | PredictedShared biological functionEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0373
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G51070 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2279
| Unknown | ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G22060 | Predictedinteraction prediction | FSW = 0.0857
| Unknown | ATJ2 PROTEIN BINDING |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0328
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G68720 | PredictedAffinity Capture-MS | FSW = 0.0702
| Unknown | TADA (TRNA ARGININE ADENOSINE DEAMINASE) CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT1G65040 | PredictedAffinity Capture-MS | FSW = 0.0428
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G62740 | PredictedReconstituted ComplexAffinity Capture-Westerninteraction prediction | FSW = 0.1419
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT2G18040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0159
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G57015 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0043
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0058
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT1G24310 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0205
| Unknown | UNKNOWN PROTEIN |
AT2G47620 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT1G04130 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0976
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G10580 | PredictedPhenotypic Suppression | FSW = 0.0088
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0090
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G63160 | PredictedAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.0075
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT1G78580 | PredictedPhenotypic Enhancement | FSW = 0.0485
| Unknown | ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G15790 | PredictedAffinity Capture-MS | FSW = 0.0452
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G27600 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0201
| Unknown | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G34180 | PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G13330 | PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | BINDING |
AT5G37830 | PredictedAffinity Capture-MS | FSW = 0.0144
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
AT3G17660 | Predictedinterologs mapping | FSW = 0.0543
| Unknown | AGD15 (ARF-GAP DOMAIN 15) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G12270 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0927
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT1G16980 | PredictedPhenotypic Enhancement | FSW = 0.0120
| Unknown | ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454