Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G74320 - ( choline kinase putative )
22 Proteins interacs with AT1G74320Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G72730 | PredictedPhenotypic Suppression | FSW = 0.0518
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G30270 | PredictedAffinity Capture-MS | FSW = 0.0912
| Unknown | CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT5G19830 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT1G59740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0527
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G59950 | PredictedAffinity Capture-MS | FSW = 0.0431
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G50670 | PredictedAffinity Capture-MS | FSW = 0.0480
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G64880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0283
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT5G55160 | PredictedAffinity Capture-MS | FSW = 0.1429
| Unknown | SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) PROTEIN BINDING / PROTEIN TAG |
AT1G06830 | PredictedAffinity Capture-MS | FSW = 0.1210
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G33090 | PredictedAffinity Capture-MS | FSW = 0.0221
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT2G31020 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0367
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0285
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G17610 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN |
AT4G21480 | PredictedAffinity Capture-MS | FSW = 0.0446
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G33200 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | XI-I MOTOR/ PROTEIN BINDING |
AT4G37680 | PredictedSynthetic Lethality | FSW = 0.0940
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT5G16040 | Predictedtwo hybrid | FSW = 0.0316
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT4G00720 | Predictedinteraction predictionCo-expression | FSW = 0.0554
| Unknown | ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G71697 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1078
| Unknown | ATCK1 (CHOLINE KINASE 1) CHOLINE KINASE |
AT2G26830 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1129
| Unknown | EMB1187 (EMBRYO DEFECTIVE 1187) KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT4G09760 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2483
| Unknown | CHOLINE KINASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454