Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G74560 - ( NRP1 (NAP1-RELATED PROTEIN 1) DNA binding / chromatin binding / histone binding )

78 Proteins interacs with AT1G74560
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09200

Predicted

Reconstituted Complex

FSW = 0.0597

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT3G47520

Predicted

Synthetic Lethality

FSW = 0.0330

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT1G20260

Predicted

Phenotypic Enhancement

FSW = 0.1560

Unknown

HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G57990

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1764

Unknown

UNKNOWN PROTEIN
AT3G62870

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.0479

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G10350

Predicted

Phenotypic Enhancement

FSW = 0.0243

Unknown

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT3G22890

Predicted

Synthetic Lethality

FSW = 0.3622

Unknown

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT4G33650

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2308

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT5G51820

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2904

Unknown

PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT5G25400

Predicted

Reconstituted Complex

Synthetic Rescue

FSW = 0.1879

Unknown

PHOSPHATE TRANSLOCATOR-RELATED
AT1G64190

Predicted

Phenotypic Enhancement

FSW = 0.0980

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT1G48860

Predicted

Synthetic Lethality

FSW = 0.2924

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT1G10070

Predicted

biochemical

two hybrid

FSW = 0.0885

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT1G26160

Predicted

Affinity Capture-MS

FSW = 0.0119

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT5G60540

Predicted

Phenotypic Enhancement

FSW = 0.2906

Unknown

PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT3G12110

Predicted

two hybrid

FSW = 0.0015

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G05670

Predicted

interologs mapping

synthetic growth defect

Synthetic Lethality

FSW = 0.0458

Unknown

SIGNAL RECOGNITION PARTICLE BINDING
AT4G08800Predicted

Synthetic Rescue

FSW = 0.2837

Unknown

PROTEIN KINASE PUTATIVE
AT3G50690

Predicted

in vitro

in vivo

in vivo

in vitro

FSW = 0.0259

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT3G56760

Predicted

two hybrid

FSW = 0.0471

Unknown

CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE
AT4G33090

Predicted

Synthetic Lethality

FSW = 0.1206

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT1G80050

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3460

Unknown

APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT4G22120

Predicted

two hybrid

two hybrid

FSW = 0.0093

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT4G28860

Predicted

Synthetic Lethality

FSW = 0.0607

Unknown

CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G79020

Predicted

Reconstituted Complex

FSW = 0.0591

Unknown

TRANSCRIPTION FACTOR-RELATED
AT3G52250

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1657

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT4G23900

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0157

Unknown

NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4)
AT5G24090

Predicted

Synthetic Lethality

FSW = 0.1299

Unknown

ACIDIC ENDOCHITINASE (CHIB1)
AT2G19980

Predicted

Phenotypic Enhancement

FSW = 0.1705

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G07140

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1052

Unknown

GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN
AT3G08730

Predicted

synthetic growth defect

Synthetic Lethality

interologs mapping

FSW = 0.0110

Unknown

PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G18800

Predicted

Shared biological function

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0251

Unknown

NRP2 (NAP1-RELATED PROTEIN 2) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
AT2G41460

Predicted

in vivo

in vivo

Affinity Capture-MS

in vitro

Co-expression

FSW = 0.0496

Unknown

ARP DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE
AT4G39200

Predicted

Phenotypic Enhancement

FSW = 0.2576

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT5G66130

Predicted

interologs mapping

FSW = 0.0048

Unknown

ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT1G62800

Predicted

Synthetic Lethality

FSW = 0.1338

Unknown

ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT4G34540

Predicted

two hybrid

FSW = 0.0035

Unknown

ISOFLAVONE REDUCTASE FAMILY PROTEIN
AT5G23420

Predicted

Affinity Capture-MS

in vitro

in vivo

FSW = 0.0297

Unknown

HMGB6 TRANSCRIPTION FACTOR
AT1G06090

Predicted

interologs mapping

FSW = 0.0157

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN
AT1G06550

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1582

Unknown

ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN
AT1G19750

Predicted

Phenotypic Enhancement

FSW = 0.1470

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G21370

Predicted

Phenotypic Enhancement

FSW = 0.1496

Unknown

UNKNOWN PROTEIN
AT1G25155Predicted

Synthetic Lethality

FSW = 0.1684

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G27080

Predicted

Phenotypic Enhancement

FSW = 0.1045

Unknown

NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT1G27320

Predicted

Phenotypic Enhancement

FSW = 0.1340

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G43910

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2843

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G52500

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3029

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G10210

Predicted

biochemical

FSW = 0.1289

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G35350

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.3791

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G55060

Predicted

Synthetic Lethality

FSW = 0.1429

Unknown

UBQ12 (UBIQUITIN 12) PROTEIN BINDING
AT1G55810

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0387

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G78770

Predicted

Synthetic Lethality

FSW = 0.1342

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT1G80510

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1110

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT2G20410

Predicted

two hybrid

FSW = 0.0235

Unknown

ACTIVATING SIGNAL COINTEGRATOR-RELATED
AT2G48100

Predicted

Synthetic Lethality

FSW = 0.2908

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G18660

Predicted

synthetic growth defect

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1756

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G22290

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.3793

Unknown

UNKNOWN PROTEIN
AT3G24010

Predicted

Synthetic Lethality

FSW = 0.1501

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G45240

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1877

Unknown

GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE
AT3G53030

Predicted

Synthetic Lethality

FSW = 0.1182

Unknown

SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT3G59540Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2849

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT4G19880

Predicted

Synthetic Lethality

FSW = 0.2084

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)
AT4G25950

Predicted

two hybrid

FSW = 0.1572

Unknown

VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G27130

Predicted

Synthetic Lethality

FSW = 0.3712

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G27960

Predicted

Synthetic Lethality

FSW = 0.1540

Unknown

UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT1G80710

Predicted

Synthetic Lethality

FSW = 0.0912

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G31260

Predicted

Synthetic Lethality

FSW = 0.1272

Unknown

APG9 (AUTOPHAGY 9)
AT2G32160

Predicted

Synthetic Lethality

FSW = 0.2762

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK)
AT2G40010

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0192

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)
AT3G11230

Predicted

Phenotypic Enhancement

FSW = 0.2341

Unknown

YIPPEE FAMILY PROTEIN
AT4G24160

Predicted

Phenotypic Enhancement

FSW = 0.1623

Unknown

HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN
AT5G01770

Predicted

Phenotypic Enhancement

FSW = 0.1894

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G14060

Predicted

Synthetic Lethality

FSW = 0.2693

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G44830

Predicted

Synthetic Lethality

FSW = 0.1086

Unknown

GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT5G45620

Predicted

Synthetic Lethality

FSW = 0.1364

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G49970

Predicted

Phenotypic Enhancement

FSW = 0.2257

Unknown

ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G64760

Predicted

Phenotypic Enhancement

FSW = 0.1508

Unknown

RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)
AT1G50490

Predicted

Shared biological function

Co-expression

FSW = 0.0274

Unknown

UBC20 (UBIQUITIN-CONJUGATING ENZYME 20) UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454