Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G74810 - ( BOR5 anion exchanger )
44 Proteins interacs with AT1G74810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT2G17360 | PredictedSynthetic Rescue | FSW = 0.0413
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT4G16660 | PredictedSynthetic Lethality | FSW = 0.0288
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT3G09440 | PredictedSynthetic Lethality | FSW = 0.0769
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3) |
AT3G22890 | PredictedSynthetic Lethality | FSW = 0.0564
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT1G74710 | PredictedSynthetic Lethality | FSW = 0.0498
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G51540 | PredictedAffinity Capture-Westerntwo hybridinterologs mapping | FSW = 0.0224
| Unknown | METALLOENDOPEPTIDASE |
AT5G15450 | PredictedSynthetic Lethality | FSW = 0.0920
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G10070 | Predictedbiochemicalbiochemical | FSW = 0.0509
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G13120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1508
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT5G03650 | PredictedSynthetic Lethality | FSW = 0.0685
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT3G53960 | Predictedsynthetic growth defectAffinity Capture-Western | FSW = 0.0947
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G21700 | PredictedPhenotypic Enhancement | FSW = 0.0697
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.2829
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT3G60360 | PredictedSynthetic Lethality | FSW = 0.0263
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT2G17800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic LethalityPhenotypic Enhancement | FSW = 0.1347
| Unknown | ARAC1 GTP BINDING |
AT1G35350 | PredictedSynthetic Lethality | FSW = 0.1636
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G55060 | Predictedsynthetic growth defectReconstituted Complex | FSW = 0.2702
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G66590 | PredictedSynthetic Lethality | FSW = 0.1190
| Unknown | COX19 FAMILY PROTEIN |
AT1G68200 | PredictedSynthetic Rescue | FSW = 0.0126
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT1G10210 | Predictedbiochemical | FSW = 0.0980
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT4G14000 | PredictedSynthetic Lethalitytwo hybridSynthetic Lethality | FSW = 0.1486
| Unknown | UNKNOWN PROTEIN |
AT4G20280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.2945
| Unknown | TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT5G19150 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0129
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G60550 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.4737
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT2G15910 | PredictedSynthetic Lethality | FSW = 0.0653
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0424
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G31060 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0156
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.1054
| Unknown | XIF MOTOR |
AT2G34250 | Predictedsynthetic growth defect | FSW = 0.0876
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0660
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G22290 | PredictedSynthetic Lethality | FSW = 0.1733
| Unknown | UNKNOWN PROTEIN |
AT3G45240 | PredictedSynthetic Lethality | FSW = 0.1705
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G47300 | PredictedSynthetic Lethality | FSW = 0.2222
| Unknown | SELT (SELT-LIKE PROTEIN PRECURSOR) SELENIUM BINDING |
AT4G13020 | PredictedSynthetic Lethality | FSW = 0.0308
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G27130 | PredictedSynthetic Lethality | FSW = 0.1504
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G15240 | PredictedSynthetic Lethality | FSW = 0.1547
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G17860 | PredictedSynthetic Lethality | FSW = 0.1189
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G45620 | PredictedSynthetic Lethality | FSW = 0.0968
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G55180 | PredictedSynthetic Lethality | FSW = 0.1571
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G66610 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0877
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
AT2G41720 | PredictedGene fusion method | FSW = 0.0833
| Unknown | EMB2654 (EMBRYO DEFECTIVE 2654) |
AT4G03470 | PredictedGene fusion method | FSW = 0.0833
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454