Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G75080 - ( BZR1 (BRASSINAZOLE-RESISTANT 1) DNA binding / transcription regulator/ transcription repressor )

9 Proteins interacs with AT1G75080
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78300

Experimental

FSW = 0.0764

Unknown

GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G39400

Experimental

biochemical

FSW = 0.1731

Unknown

BRI1 (BRASSINOSTEROID INSENSITIVE 1) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G10450

Experimental

pull down

far western blotting

two hybrid

Reconstituted Complex

protein complementation assay

Affinity Capture-Western

split-reporter assay

affinity technology

in vitro

FSW = 0.0994

Class D:

nucleus (p = 0.78)

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G65430

Experimental

interaction detection method

two hybrid

Affinity Capture-Western

affinity technology

two hybrid

FSW = 0.0677

Class D:

nucleus (p = 0.78)

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G10760

Experimental

interaction detection method

FSW = 0.0863

Class D:

nucleus (p = 0.78)

MTA (MRNA ADENOSINE METHYLASE) S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE/ METHYLTRANSFERASE
AT1G35160

Experimental

FSW = 0.1387

Class D:

plastid (p = 0.78)

GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G22300

Experimental

interaction detection method

two hybrid

Affinity Capture-Western

affinity technology

two hybrid

FSW = 0.1525

Class D:

plastid (p = 0.78)

GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G18710

Experimental

biochemical

two hybrid

two hybrid

protein kinase assay

interaction detection method

two hybrid

biochemical

FSW = 0.1026

Class D:

nucleus (p = 0.78)

BIN2 (BRASSINOSTEROID-INSENSITIVE 2) GLYCOGEN SYNTHASE KINASE 3/ KINASE/ PROTEIN KINASE
AT1G19350

Experimental

two hybrid

FSW = 0.2689

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

BES1 (BRI1-EMS-SUPPRESSOR 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454