Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G75510 - ( transcription initiation factor IIF beta subunit (TFIIF-beta) family protein )

72 Proteins interacs with AT1G75510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G44950

Predicted

Phenotypic Enhancement

FSW = 0.2170

Class C:

mitochondrion

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT4G04910

Predicted

Synthetic Lethality

FSW = 0.0108

Unknown

NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G22110

Predicted

Phenotypic Enhancement

FSW = 0.0636

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G13710

Predicted

Phenotypic Enhancement

FSW = 0.0567

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT4G12610

Predicted

Co-purification

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

in vivo

in vitro

Affinity Capture-MS

Affinity Capture-Western

Co-purification

synthetic growth defect

Enriched domain pair

FSW = 0.2643

Unknown

TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN
AT4G35800

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

in vitro

FSW = 0.2952

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G58230

Predicted

Phenotypic Enhancement

FSW = 0.0128

Unknown

MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT1G71440

Predicted

Phenotypic Suppression

FSW = 0.0260

Unknown

PFI (PFIFFERLING)
AT5G23630

Predicted

Phenotypic Enhancement

FSW = 0.0797

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.1124

Unknown

SEC22 TRANSPORTER
AT5G52640

Predicted

two hybrid

FSW = 0.0234

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G44680

Predicted

Phenotypic Enhancement

FSW = 0.0758

Unknown

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT3G10330

Predicted

Co-purification

interaction prediction

FSW = 0.0869

Unknown

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT1G21700

Predicted

Phenotypic Enhancement

FSW = 0.0467

Unknown

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT4G20340

Predicted

in vitro

FSW = 0.1317

Unknown

RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT3G12810

Predicted

Phenotypic Enhancement

FSW = 0.1661

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G17609

Predicted

in vitro

FSW = 0.0141

Unknown

HYH (HY5-HOMOLOG) DNA BINDING / TRANSCRIPTION FACTOR
AT3G16980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3772

Unknown

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G35910

Predicted

Phenotypic Enhancement

FSW = 0.1654

Unknown

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT5G09860

Predicted

Affinity Capture-Western

FSW = 0.1004

Unknown

NUCLEAR MATRIX PROTEIN-RELATED
AT1G18340

Predicted

Co-purification

FSW = 0.1053

Unknown

BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED
AT2G41630

Predicted

Co-purification

two hybrid

FSW = 0.0914

Unknown

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT1G55520

Predicted

in vitro

FSW = 0.0825

Unknown

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT5G25150

Predicted

in vitro

FSW = 0.0640

Unknown

TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT1G05055

Predicted

Affinity Capture-Western

FSW = 0.1442

Unknown

GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G15430

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

interaction prediction

FSW = 0.4075

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G38560

Predicted

Co-purification

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.3218

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT4G08350

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1536

Unknown

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G36740

Predicted

Phenotypic Enhancement

FSW = 0.2453

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G34210

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1509

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT2G43810

Predicted

Phenotypic Enhancement

FSW = 0.1757

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT5G09920

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3165

Unknown

NRPB4 DNA-DIRECTED RNA POLYMERASE
AT3G52090

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3639

Unknown

NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G21710

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3149

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0220

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G61700

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2048

Unknown

DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10)
AT2G15400

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3499

Unknown

NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G54260

Predicted

Phenotypic Enhancement

FSW = 0.0799

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G59180

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3996

Unknown

NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING
AT3G22320

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

in vivo

in vitro

FSW = 0.2899

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G20330

Predicted

in vitro

in vitro

FSW = 0.1340

Unknown

TRANSCRIPTION INITIATION FACTOR-RELATED
AT1G15780

Predicted

Affinity Capture-Western

Phenotypic Enhancement

FSW = 0.2157

Unknown

UNKNOWN PROTEIN
AT1G34150

Predicted

Phenotypic Enhancement

FSW = 0.0960

Unknown

TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.1370

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G54250

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3181

Unknown

NRPB8A DNA-DIRECTED RNA POLYMERASE
AT1G08780

Predicted

Phenotypic Enhancement

FSW = 0.1513

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G49540

Predicted

Phenotypic Enhancement

FSW = 0.1706

Unknown

NUCLEOTIDE BINDING
AT1G52740

Predicted

Phenotypic Enhancement

FSW = 0.1501

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT2G16950

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0022

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT2G44150

Predicted

Phenotypic Enhancement

FSW = 0.2098

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.1332

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G42660

Predicted

Phenotypic Enhancement

FSW = 0.0993

Unknown

NUCLEOTIDE BINDING
AT3G61740

Predicted

Phenotypic Enhancement

FSW = 0.0371

Unknown

SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G02310

Predicted

Phenotypic Suppression

FSW = 0.0442

Unknown

PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE
AT5G02880

Predicted

Phenotypic Suppression

FSW = 0.0148

Unknown

UPL4 UBIQUITIN-PROTEIN LIGASE
AT5G10260

Predicted

Phenotypic Enhancement

FSW = 0.1327

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.1217

Unknown

BINDING
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.1218

Unknown

ORMDL FAMILY PROTEIN
AT5G50320

Predicted

Phenotypic Enhancement

FSW = 0.1176

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G51940

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3088

Unknown

NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G79730

Predicted

Co-purification

Affinity Capture-Western

FSW = 0.3520

Unknown

ELF7 (EARLY FLOWERING 7)
AT3G22590

Predicted

Co-purification

Affinity Capture-Western

FSW = 0.2662

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G54380

Predicted

Phenotypic Enhancement

FSW = 0.1389

Unknown

SAC3/GANP FAMILY PROTEIN
AT3G58560

Predicted

Affinity Capture-Western

FSW = 0.1188

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G41340

Predicted

Phenotypic Enhancement

FSW = 0.0907

Unknown

UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE
AT5G63670

Predicted

Affinity Capture-MS

FSW = 0.2449

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G66100

Predicted

Phenotypic Enhancement

FSW = 0.1494

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT5G41010

Predicted

Affinity Capture-Western

FSW = 0.2739

Unknown

NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G58003

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.4026

Unknown

CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT1G11475

Predicted

Affinity Capture-MS

FSW = 0.1959

Unknown

NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G04630

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2324

Unknown

NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G32160

Predicted

two hybrid

FSW = 0.0079

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454