Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G75660 - ( XRN3 5-3 exoribonuclease )
25 Proteins interacs with AT1G75660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G36130 | Predictedinteraction prediction | FSW = 0.0303
| Unknown | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
AT2G27020 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0124
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G04600 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G55620 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0115
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT3G54280 | PredictedSynthetic Lethality | FSW = 0.0119
| Unknown | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G76860 | PredictedAffinity Capture-MStwo hybridCo-expression | FSW = 0.0150
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G17620 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mappingbiochemicalAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinteraction prediction | FSW = 0.0672
| Unknown | GLYCINE-RICH PROTEIN |
AT1G02120 | PredictedAffinity Capture-MS | FSW = 0.0714
| Unknown | VAD1 (VASCULAR ASSOCIATED DEATH1) |
AT2G28360 | PredictedAffinity Capture-MS | FSW = 0.0496
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT3G46960 | PredictedSynthetic Rescue | FSW = 0.0750
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT5G65180 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0253
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
AT2G17790 | PredictedAffinity Capture-MS | FSW = 0.0730
| Unknown | VPS35A (VPS35 HOMOLOG A) |
AT2G17980 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | ATSLY1 PROTEIN TRANSPORTER |
AT5G55130 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0150
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
AT5G25757 | PredictedAffinity Capture-MS | FSW = 0.0315
| Unknown | UNKNOWN PROTEIN |
AT1G69410 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0714
| Unknown | ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) TRANSLATION INITIATION FACTOR |
AT3G26990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0591
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK) |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G07990 | PredictedAffinity Capture-MS | FSW = 0.0591
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT5G40490 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G75850 | PredictedAffinity Capture-MS | FSW = 0.0750
| Unknown | VPS35B (VPS35 HOMOLOG B) |
AT5G46190 | Predictedtwo hybrid | FSW = 0.0127
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT2G39260 | Predictedtwo hybridCo-expression | FSW = 0.0173
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
AT1G54490 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0282
| Unknown | XRN4 (EXORIBONUCLEASE 4) 5-3 EXONUCLEASE/ 5-3 EXORIBONUCLEASE/ NUCLEIC ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454