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AT1G75950 - ( SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) protein binding / ubiquitin-protein ligase )

116 Proteins interacs with AT1G75950

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G25280	Experimental two hybrid	FSW = 0.0378	Class A: plasma membrane Class B: nucleus cytosol	ATTLP10 (TUBBY LIKE PROTEIN 10) PHOSPHORIC DIESTER HYDROLASE/ TRANSCRIPTION FACTOR
AT5G57360	Experimental two hybrid pull down	FSW = 0.1961	Class A: nucleus cytosol Class B: plasma membrane Class D: cytosol (p = 0.67)	ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G18790	Experimental	FSW = 0.0091	Class A: nucleus cytosol Class B: plasma membrane Class D: cytosol (p = 0.67)	PHYB (PHYTOCHROME B) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER
AT1G22590	Experimental	FSW = 0.0192	Class A: nucleus cytosol Class B: plasma membrane	MADS-BOX FAMILY PROTEIN
AT4G24540	Experimental pull down	FSW = 0.0212	Class A: nucleus cytosol Class B: plasma membrane	AGL24 (AGAMOUS-LIKE 24) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT4G02440	Experimental two hybrid two hybrid protein complementation assay two hybrid	FSW = 0.1372	Class A: nucleus Class B: plasma membrane cytosol Class D: cytosol (p = 0.67)	EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) UBIQUITIN-PROTEIN LIGASE
AT1G67340	Experimental	FSW = 0.0595	Class A: nucleus Class B: plasma membrane cytosol Class D: cytosol (p = 0.67)	ZINC FINGER (MYND TYPE) FAMILY PROTEIN / F-BOX FAMILY PROTEIN
AT1G80110	Experimental two hybrid	FSW = 0.0500	Class A: nucleus Class B: plasma membrane cytosol Class D: cytosol (p = 0.67)	ATPP2-B11 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-B11) CARBOHYDRATE BINDING
AT5G52470	Experimental two hybrid	FSW = 0.0071	Class A: nucleus Class B: plasma membrane cytosol Class D: cytosol (p = 0.67)	FIB1 (FIBRILLARIN 1) SNORNA BINDING
AT1G31640	Experimental	FSW = 0.0512	Class A: nucleus Class B: plasma membrane cytosol	AGL92 (AGAMOUS-LIKE 92) DNA BINDING / TRANSCRIPTION FACTOR
AT1G09700	Experimental pull down	FSW = 0.0176	Class A: nucleus Class B: plasma membrane cytosol	HYL1 (HYPONASTIC LEAVES 1) DOUBLE-STRANDED RNA BINDING / MIRNA BINDING / PROTEIN BINDING
AT5G65330	Experimental	FSW = 0.0294	Class A: nucleus Class B: plasma membrane cytosol	AGL78 (AGAMOUS-LIKE 78) TRANSCRIPTION FACTOR
AT5G06500	Experimental	FSW = 0.0134	Class A: nucleus Class B: plasma membrane cytosol	AGL96 (AGAMOUS-LIKE 96) DNA BINDING / TRANSCRIPTION FACTOR
AT3G18650	Experimental	FSW = 0.0200	Class A: nucleus Class B: plasma membrane cytosol	AGL103 (AGAMOUS-LIKE 103) TRANSCRIPTION FACTOR
AT3G06380	Experimental two hybrid	FSW = 0.0086	Class A: cytosol Class B: plasma membrane nucleus	ATTLP9 (TUBBY-LIKE PROTEIN 9) PHOSPHORIC DIESTER HYDROLASE/ PROTEIN BINDING / TRANSCRIPTION FACTOR
AT3G51260	Experimental Reconstituted Complex two hybrid	FSW = 0.0093	Class B: vacuole plastid plasma membrane nucleus cytosol Class D: cytosol (p = 0.67)	PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G04460	Experimental	FSW = 0.0210	Class B: plasma membrane peroxisome nucleus cytosol	PEX12 PROTEIN BINDING / ZINC ION BINDING
AT2G25490	Experimental two hybrid two hybrid two hybrid two hybrid Reconstituted Complex	FSW = 0.0366	Class D: cytosol (p = 0.67)	EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G02570	Experimental two hybrid two hybrid Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western protein tri hybrid Affinity Capture-Western	FSW = 0.2217	Class D: cytosol (p = 0.67)	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT3G23050	Experimental interaction detection method pull down Reconstituted Complex	FSW = 0.0624	Class D: cytosol (p = 0.67)	IAA7 (INDOLE-3-ACETIC ACID 7) TRANSCRIPTION FACTOR
AT1G30950	Experimental two hybrid two hybrid two hybrid two hybrid two hybrid Reconstituted Complex	FSW = 0.2006	Unknown	UFO (UNUSUAL FLORAL ORGANS) TRANSCRIPTION FACTOR BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G25350	Experimental Reconstituted Complex	FSW = 0.0462	Unknown	EBF2 (EIN3-BINDING F BOX PROTEIN 2) PROTEIN BINDING
AT2G39940	Experimental two hybrid Affinity Capture-Western two hybrid two hybrid Reconstituted Complex coimmunoprecipitation	FSW = 0.0756	Unknown	COI1 (CORONATINE INSENSITIVE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G68050	Experimental two hybrid	FSW = 0.0918	Unknown	FKF1 (FLAVIN-BINDING KELCH REPEAT F BOX 1) SIGNAL TRANSDUCER/ TWO-COMPONENT SENSOR/ UBIQUITIN-PROTEIN LIGASE
AT3G61590	Experimental two hybrid	FSW = 0.1513	Unknown	HWS (HAWAIIAN SKIRT) UBIQUITIN-PROTEIN LIGASE
AT5G49610	Experimental two hybrid	FSW = 0.0956	Unknown	F-BOX FAMILY PROTEIN
AT5G52120	Experimental two hybrid	FSW = 0.1205	Unknown	ATPP2-A14 (PHLOEM PROTEIN 2-A14) CARBOHYDRATE BINDING
AT5G57900	Experimental two hybrid	FSW = 0.0296	Unknown	SKIP1 (SKP1 INTERACTING PARTNER 1) PROTEIN BINDING
AT1G27340	Experimental two hybrid	FSW = 0.0956	Unknown	F-BOX FAMILY PROTEIN
AT4G02740	Experimental two hybrid	FSW = 0.1372	Unknown	CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G027602) HAS 1691 BLAST HITS TO 1200 PROTEINS IN 170 SPECIES ARCHAE - 2 BACTERIA - 109 METAZOA - 687 FUNGI - 197 PLANTS - 199 VIRUSES - 23 OTHER EUKARYOTES - 474 (SOURCE NCBI BLINK)
AT4G08980	Experimental two hybrid	FSW = 0.0718	Unknown	F-BOX FAMILY PROTEIN (FBW2)
AT3G26000	Experimental two hybrid	FSW = 0.1280	Unknown	F-BOX FAMILY PROTEIN
AT2G01620	Experimental two hybrid	FSW = 0.1432	Unknown	MEE11 (MATERNAL EFFECT EMBRYO ARREST 11)
AT4G05460	Experimental two hybrid	FSW = 0.0820	Unknown	F-BOX FAMILY PROTEIN (FBL20)
AT3G62980	Experimental two hybrid Affinity Capture-Western interaction detection method interaction detection method two hybrid	FSW = 0.0731	Unknown	TIR1 (TRANSPORT INHIBITOR RESPONSE 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G61060	Experimental two hybrid	FSW = 0.1054	Unknown	ATPP2-A13 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-A13) CARBOHYDRATE BINDING
AT1G76920	Experimental two hybrid two hybrid	FSW = 0.0339	Unknown	F-BOX FAMILY PROTEIN (FBX3)
AT1G06110	Experimental	FSW = 0.0595	Unknown	SKIP16 (SKP1/ASK-INTERACTING PROTEIN 16) PROTEIN BINDING
AT5G67250	Experimental two hybrid two hybrid	FSW = 0.0296	Unknown	SKIP2 (SKP1/ASK1 INTERACTING PROTEIN 2) UBIQUITIN-PROTEIN LIGASE
AT1G21760	Experimental two hybrid	FSW = 0.0820	Unknown	FBP7 (F-BOX PROTEIN 7)
AT5G42190	Experimental Affinity Capture-Western	FSW = 0.4819	Unknown	ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G38740	Experimental	FSW = 0.0188	Unknown	AGL77 (AGAMOUS-LIKE 77) TRANSCRIPTION FACTOR
AT5G58890	Experimental	FSW = 0.0103	Unknown	AGL82 (AGAMOUS-LIKE 82) DNA BINDING / TRANSCRIPTION FACTOR
AT5G27960	Experimental	FSW = 0.0200	Unknown	MADS-BOX PROTEIN (AGL90)
AT1G78100	Experimental	FSW = 0.0437	Unknown	F-BOX FAMILY PROTEIN
AT1G55000	Experimental	FSW = 0.0595	Unknown	PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN
AT2G20160	Experimental	FSW = 0.2722	Unknown	MEO (MEIDOS) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G38940	Experimental	FSW = 0.0600	Unknown	KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT1G63090	Experimental two hybrid	FSW = 0.0375	Unknown	ATPP2-A11 (PHLOEM PROTEIN 2-A11) CARBOHYDRATE BINDING
AT2G02870	Experimental two hybrid	FSW = 0.0588	Unknown	KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT3G59940	Experimental two hybrid	FSW = 0.0500	Unknown	KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT2G02230	Experimental two hybrid	FSW = 0.0375	Unknown	ATPP2-B1 (PHLOEM PROTEIN 2-B1) CARBOHYDRATE BINDING
AT1G23780	Experimental two hybrid	FSW = 0.0429	Unknown	F-BOX FAMILY PROTEIN
AT4G03190	Experimental two hybrid two hybrid	FSW = 0.0609	Unknown	GRH1 (GRR1-LIKE PROTEIN 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G12820	Experimental	FSW = 0.0299	Unknown	AFB3 (AUXIN SIGNALING F-BOX 3) AUXIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G24210	Experimental two hybrid	FSW = 0.0975	Unknown	SLY1 (SLEEPY1)
AT5G48170	Experimental two hybrid	FSW = 0.1129	Unknown	SLY2 (SLEEPY2)
AT2G24540	Experimental two hybrid	FSW = 0.0512	Unknown	AFR (ATTENUATED FAR-RED RESPONSE)
AT1G08710	Experimental two hybrid	FSW = 0.0500	Unknown	F-BOX FAMILY PROTEIN
AT1G31350	Experimental two hybrid	FSW = 0.0500	Unknown	F-BOX FAMILY PROTEIN
AT4G21510	Experimental two hybrid	FSW = 0.0500	Unknown	F-BOX FAMILY PROTEIN
AT3G63220	Experimental two hybrid	FSW = 0.0375	Unknown	KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT5G45360	Experimental two hybrid	FSW = 0.0500	Unknown	F-BOX FAMILY PROTEIN
AT2G04550	Experimental two hybrid	FSW = 0.0273	Unknown	IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5) MAP KINASE PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE
AT5G65495	Experimental	FSW = 0.0084	Unknown	UNKNOWN PROTEIN
AT3G59910	Experimental two hybrid	FSW = 0.0429	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ANKYRIN (INTERPROIPR002110) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G440902) HAS 43 BLAST HITS TO 43 PROTEINS IN 10 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 40 VIRUSES - 0 OTHER EUKARYOTES - 3 (SOURCE NCBI BLINK)
AT2G21950	Experimental two hybrid	FSW = 0.0546	Unknown	SKIP6 (SKP1 INTERACTING PARTNER 6) UBIQUITIN-PROTEIN LIGASE
AT3G01090	Experimental two hybrid Reconstituted Complex	FSW = 0.0044	Unknown	AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G29160	Experimental Reconstituted Complex two hybrid	FSW = 0.0294	Unknown	AKIN11 (ARABIDOPSIS SNF1 KINASE HOMOLOG 11) PROTEIN BINDING / PROTEIN KINASE
AT2G02350	Experimental two hybrid	FSW = 0.0084	Unknown	SKIP3 (SKP1 INTERACTING PARTNER 3) CARBOHYDRATE BINDING
AT3G61350	Experimental two hybrid	FSW = 0.0084	Unknown	SKIP4 (SKP1 INTERACTING PARTNER 4)
AT3G54480	Experimental two hybrid	FSW = 0.0084	Unknown	SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5)
AT5G48990	Experimental Reconstituted Complex pull down	FSW = 0.0303	Unknown	KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
YJR090C	Experimental two hybrid	FSW = 0.0177	Unknown	KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT4G10930	Experimental two hybrid	FSW = 0.0336	Unknown	UNKNOWN PROTEIN
AT2G17030	Experimental two hybrid	FSW = 0.0336	Unknown	F-BOX FAMILY PROTEIN
AT2G42620	Experimental Affinity Capture-Western coimmunoprecipitation	FSW = 0.0177	Unknown	MAX2 (MORE AXILLARY BRANCHES 2) UBIQUITIN-PROTEIN LIGASE
AT4G12560	Experimental two hybrid protein complementation assay	FSW = 0.1786	Unknown	F-BOX FAMILY PROTEIN
AT3G61740	Experimental two hybrid Reconstituted Complex	FSW = 0.0022	Unknown	SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G52310	Predicted two hybrid	FSW = 0.0087	Class C: plasma membrane	ABC TRANSPORTER FAMILY PROTEIN
AT2G18915	Predicted two hybrid Enriched domain pair Co-expression	FSW = 0.0879	Class C: nucleus cytosol	LKP2 (LOV KELCH PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G20140	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method	FSW = 0.2793	Class C: nucleus	ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G60020	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.2654	Class C: nucleus	ASK5 (ARABIDOPSIS SKP1-LIKE 5) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G11980	Predicted two hybrid	FSW = 0.0184	Unknown	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT-RELATED / COG COMPLEX COMPONENT-RELATED
AT3G56310	Predicted two hybrid	FSW = 0.0252	Unknown	ALPHA-GALACTOSIDASE PUTATIVE / MELIBIASE PUTATIVE / ALPHA-D-GALACTOSIDE GALACTOHYDROLASE PUTATIVE
AT1G56190	Predicted two hybrid	FSW = 0.0041	Unknown	PHOSPHOGLYCERATE KINASE PUTATIVE
AT5G35790	Predicted two hybrid	FSW = 0.0091	Unknown	G6PD1 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 1) GLUCOSE-6-PHOSPHATE DEHYDROGENASE
AT3G06530	Predicted two hybrid	FSW = 0.0044	Unknown	BINDING
AT5G65110	Predicted two hybrid	FSW = 0.0067	Unknown	ACX2 (ACYL-COA OXIDASE 2) ACYL-COA OXIDASE
AT5G42970	Predicted Synthetic Lethality	FSW = 0.0272	Unknown	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING
AT5G40820	Predicted Synthetic Rescue	FSW = 0.0044	Unknown	ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT5G20850	Predicted two hybrid	FSW = 0.0058	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT5G20570	Predicted Affinity Capture-Western	FSW = 0.0255	Unknown	RBX1 (RING-BOX 1) PROTEIN BINDING
AT1G71230	Predicted Synthetic Lethality	FSW = 0.0416	Unknown	CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING
AT1G72340	Predicted two hybrid	FSW = 0.0023	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT5G27620	Predicted two hybrid Affinity Capture-Western	FSW = 0.0077	Unknown	CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT2G26490	Predicted two hybrid Affinity Capture-Western	FSW = 0.0090	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G10570	Predicted Synthetic Lethality	FSW = 0.0176	Unknown	UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9) CYSTEINE-TYPE ENDOPEPTIDASE/ UBIQUITIN THIOLESTERASE
AT5G46280	Predicted two hybrid	FSW = 0.0025	Unknown	DNA REPLICATION LICENSING FACTOR PUTATIVE
AT3G61240	Predicted two hybrid	FSW = 0.0090	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH12)
AT5G10810	Predicted two hybrid	FSW = 0.0264	Unknown	ATER
AT1G17720	Predicted two hybrid	FSW = 0.0059	Unknown	ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G16350	Predicted two hybrid	FSW = 0.0056	Unknown	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT3G07550	Predicted two hybrid Enriched domain pair Co-expression	FSW = 0.0588	Unknown	F-BOX FAMILY PROTEIN (FBL12)
AT3G60010	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.4559	Unknown	ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03160	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.2740	Unknown	ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G21830	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.2667	Unknown	ASK8 (ARABIDOPSIS SKP1-LIKE 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G25650	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.2781	Unknown	ASK15 (ARABIDOPSIS SKP1-LIKE 15) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03170	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.3935	Unknown	ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03190	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.2848	Unknown	ASK16 (ARABIDOPSIS SKP1-LIKE 16) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G21860	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.2722	Unknown	ASK10 (ARABIDOPSIS SKP1-LIKE 10) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G10230	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.3204	Unknown	ASK18 (ARABIDOPSIS SKP1-LIKE 18) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G21850	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.3682	Unknown	ASK9 (ARABIDOPSIS SKP1-LIKE 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G25700	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.3546	Unknown	ASK3 (ARABIDOPSIS SKP1-LIKE 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G34210	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.5728	Unknown	ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G34470	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.3682	Unknown	ASK12 (ARABIDOPSIS SKP1-LIKE 12) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G75950 - ( SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) protein binding / ubiquitin-protein ligase )

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