Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G76040 - ( CPK29 ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase )
36 Proteins interacs with AT1G76040| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G36530
   | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.4341
| Class C:vacuoleplasma membranenucleuscytosol | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
| AT3G01280
| PredictedAffinity Capture-MS | FSW = 0.0262
| Class C:vacuoleplasma membrane | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
| AT1G06530
| PredictedGene fusion method | FSW = 0.0918
| Class C:vacuole | MYOSIN HEAVY CHAIN-RELATED |
| AT1G31780
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2672
| Class C:vacuole | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
| AT2G47470
| PredictedGene fusion method | FSW = 0.0504
| Class C:vacuole | UNE5 (UNFERTILIZED EMBRYO SAC 5) PROTEIN DISULFIDE ISOMERASE |
| AT1G02780
| PredictedReconstituted Complex | FSW = 0.0150
| Class C:plasma membranenucleus | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G73230
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3709
| Class C:plasma membranenucleus | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
| AT3G55810
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1194
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
| AT5G40000
| PredictedAffinity Capture-MS | FSW = 0.1268
| Class C:nucleus | AAA-TYPE ATPASE FAMILY PROTEIN |
| AT4G34430
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2757
| Class C:nucleus | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT3G52250
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2632
| Class C:nucleus | DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G21190
| PredictedAffinity Capture-Western | FSW = 0.0167
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G40290
| PredictedAffinity Capture-MS | FSW = 0.2131
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
| AT4G36590
| PredictedAffinity Capture-MS | FSW = 0.3863
| Class C:nucleus | MADS-BOX PROTEIN (AGL40) |
| AT2G44350
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.4842
| Unknown | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
| AT3G23940
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4905
| Unknown | DEHYDRATASE FAMILY |
| AT1G05660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5554
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
| AT1G25260
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3096
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
| AT1G27320
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3094
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
| AT1G25510
| PredictedAffinity Capture-MS | FSW = 0.1702
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
| AT2G19220
| PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | UNKNOWN PROTEIN |
| AT2G34980
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3599
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
| AT2G46070
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3953
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
| AT3G18660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationCo-purification | FSW = 0.2212
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
| AT3G19190
| PredictedAffinity Capture-MS | FSW = 0.0515
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ATG2 C-TERMINAL (INTERPROIPR015412) HAS 603 BLAST HITS TO 514 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 19 METAZOA - 326 FUNGI - 168 PLANTS - 38 VIRUSES - 0 OTHER EUKARYOTES - 52 (SOURCE NCBI BLINK) |
| AT4G04210
| PredictedAffinity Capture-MS | FSW = 0.0055
| Unknown | PUX4 PROTEIN BINDING |
| AT4G21490
| PredictedAffinity Capture-MS | FSW = 0.0354
| Unknown | NDB3 NADH DEHYDROGENASE |
| AT5G01640
| PredictedAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridtwo hybridAffinity Capture-MSPhenotypic Suppression | FSW = 0.6706
| Unknown | PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5) |
| AT5G16040
| Predictedinterologs mapping | FSW = 0.0037
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
| AT5G25030
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.7347
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
| AT5G26250
| PredictedAffinity Capture-MS | FSW = 0.2986
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT5G37830
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4444
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
| AT5G44830
| PredictedAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationSynthetic Lethality | FSW = 0.2928
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
| AT5G59850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.5036
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
| AT5G13010
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4392
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT1G63230
| PredictedGene fusion method | FSW = 0.0679
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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