Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G76300 - ( SmD3 (snRNP core protein SmD3) )

87 Proteins interacs with AT1G76300
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G27090

Predicted

Phenotypic Enhancement

FSW = 0.0692

Class C:

nucleus

 60S RIBOSOMAL PROTEIN L14 (RPL14B)
AT1G56070

Predicted

two hybrid

two hybrid

FSW = 0.0026

Class C:

nucleus

 LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT5G01410

Predicted

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

FSW = 0.0716

Class C:

nucleus

 RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT3G45770

Predicted

two hybrid

FSW = 0.0976

Class C:

nucleus

 OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT1G09770

Predicted

Affinity Capture-MS

FSW = 0.0138

Class C:

nucleus

 ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT1G74710

Predicted

synthetic growth defect

FSW = 0.0720

Class C:

nucleus

 ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.1700

Class C:

nucleus

 ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT2G42590

Predicted

two hybrid

FSW = 0.0556

Class C:

nucleus

 GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G60540

Predicted

Phenotypic Enhancement

FSW = 0.1960

Class C:

nucleus

 PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT2G45710

Predicted

Synthetic Rescue

FSW = 0.0278

Class C:

nucleus

 40S RIBOSOMAL PROTEIN S27 (RPS27A)
AT4G20440

Predicted

in vitro

FSW = 0.0046

Class C:

nucleus

 SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B)
AT5G44500

Predicted

in vitro

FSW = 0.0155

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT2G34450

Predicted

Phenotypic Enhancement

FSW = 0.1569

Class C:

nucleus

 HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT3G50670

Predicted

Co-purification

FSW = 0.0195

Class C:

nucleus

 U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G39160

Predicted

Phenotypic Enhancement

FSW = 0.0326

Class C:

nucleus

 DNA BINDING / TRANSCRIPTION FACTOR
AT1G21190

Predicted

two hybrid

FSW = 0.0789

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G76860

Predicted

two hybrid

FSW = 0.0262

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

two hybrid

two hybrid

two hybrid

Co-expression

FSW = 0.0175

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G09590

Predicted

Phenotypic Enhancement

FSW = 0.1596

Unknown

 MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT4G21980

Predicted

Phenotypic Enhancement

FSW = 0.0548

Unknown

 APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE
AT2G01690

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.0386

Unknown

 BINDING
AT3G62870

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0642

Unknown

 60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G35090

Predicted

Phenotypic Enhancement

FSW = 0.1137

Unknown

 CAT2 (CATALASE 2) CATALASE
AT5G14320

Predicted

Phenotypic Enhancement

FSW = 0.0156

Unknown

 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT5G03650

Predicted

Synthetic Lethality

FSW = 0.0829

Unknown

 SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT4G36640

Predicted

Colocalization

FSW = 0.0451

Unknown

 SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT1G04750

Predicted

synthetic growth defect

FSW = 0.0811

Unknown

 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT2G32670

Predicted

Phenotypic Enhancement

FSW = 0.0930

Unknown

 ATVAMP725
AT4G15000

Predicted

two hybrid

FSW = 0.0254

Unknown

 60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT1G80050

Predicted

Phenotypic Suppression

FSW = 0.1046

Unknown

 APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT2G37790

Predicted

Phenotypic Enhancement

FSW = 0.1153

Unknown

 ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G47160

Predicted

Affinity Capture-MS

FSW = 0.0079

Unknown

 BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER
AT3G29800

Predicted

Phenotypic Enhancement

FSW = 0.1698

Unknown

 AAA-TYPE ATPASE FAMILY
AT1G10060

Predicted

two hybrid

FSW = 0.0537

Unknown

 BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1)
AT1G29330

Predicted

Phenotypic Enhancement

FSW = 0.0873

Unknown

 ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT3G18480

Predicted

Phenotypic Enhancement

FSW = 0.0864

Unknown

 ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT)
AT2G19980

Predicted

Phenotypic Suppression

FSW = 0.0698

Unknown

 ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G07140

Predicted

Phenotypic Enhancement

FSW = 0.0562

Unknown

 GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN
AT2G43460

Predicted

Synthetic Lethality

FSW = 0.0178

Unknown

 60S RIBOSOMAL PROTEIN L38 (RPL38A)
AT4G15900

Predicted

two hybrid

FSW = 0.1063

Unknown

 PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G02570

Predicted

Phenotypic Enhancement

FSW = 0.0208

Unknown

 ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT2G29540

Predicted

Phenotypic Enhancement

FSW = 0.0734

Unknown

 ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0953

Unknown

 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT5G62290

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0394

Unknown

 NUCLEOTIDE-SENSITIVE CHLORIDE CONDUCTANCE REGULATOR (ICLN) FAMILY PROTEIN
AT4G31120

Predicted

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0414

Unknown

 SKB1 (SHK1 BINDING PROTEIN 1) PROTEIN METHYLTRANSFERASE
AT1G07340

Predicted

Phenotypic Enhancement

FSW = 0.0289

Unknown

 ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G07880

Predicted

two hybrid

FSW = 0.0410

Unknown

 ATMPK13 MAP KINASE/ KINASE
AT1G13580

Predicted

Phenotypic Enhancement

FSW = 0.0933

Unknown

 LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G23460

Predicted

Synthetic Lethality

FSW = 0.0984

Unknown

 POLYGALACTURONASE
AT1G34340

Predicted

Phenotypic Enhancement

FSW = 0.0738

Unknown

 ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.0770

Unknown

 MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G49520

Predicted

Phenotypic Enhancement

FSW = 0.1223

Unknown

 SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G71530

Predicted

Phenotypic Enhancement

FSW = 0.0619

Unknown

 PROTEIN KINASE FAMILY PROTEIN
AT1G08260

Predicted

synthetic growth defect

FSW = 0.0249

Unknown

 TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G20693

Predicted

synthetic growth defect

FSW = 0.1513

Unknown

 HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G25155Predicted

synthetic growth defect

FSW = 0.1128

Unknown

 ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G29970

Predicted

Phenotypic Enhancement

FSW = 0.0800

Unknown

 RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)
AT1G78770

Predicted

synthetic growth defect

FSW = 0.0748

Unknown

 CELL DIVISION CYCLE FAMILY PROTEIN
AT2G23070

Predicted

Phenotypic Enhancement

FSW = 0.0411

Unknown

 CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G24960

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1645

Unknown

 UNKNOWN PROTEIN
AT2G27340

Predicted

Phenotypic Enhancement

FSW = 0.0776

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT2G29190

Predicted

Phenotypic Enhancement

FSW = 0.0847

Unknown

 APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT3G09800

Predicted

Phenotypic Enhancement

FSW = 0.1758

Unknown

 PROTEIN BINDING
AT3G24010

Predicted

Synthetic Lethality

FSW = 0.1108

Unknown

 ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G53030

Predicted

Synthetic Lethality

FSW = 0.0983

Unknown

 SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT4G19880

Predicted

Synthetic Rescue

FSW = 0.0423

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)
AT4G26510

Predicted

synthetic growth defect

FSW = 0.0418

Unknown

 ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE
AT4G30540

Predicted

Synthetic Lethality

FSW = 0.0494

Unknown

 GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN
AT4G33200

Predicted

Phenotypic Enhancement

FSW = 0.0316

Unknown

 XI-I MOTOR/ PROTEIN BINDING
AT5G01430

Predicted

Phenotypic Enhancement

FSW = 0.1135

Unknown

 GOT1-LIKE FAMILY PROTEIN
AT5G06600

Predicted

Phenotypic Enhancement

FSW = 0.0619

Unknown

 UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT5G24840

Predicted

Synthetic Rescue

FSW = 0.0672

Unknown

 TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G38110

Predicted

Phenotypic Enhancement

FSW = 0.1201

Unknown

 ASF1B (ANTI- SILENCING FUNCTION 1B)
AT5G52200

Predicted

Phenotypic Enhancement

FSW = 0.1135

Unknown

 UNKNOWN PROTEIN
AT2G18170

Predicted

Phenotypic Enhancement

FSW = 0.0141

Unknown

 ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE
AT2G28060

Predicted

Synthetic Lethality

FSW = 0.0409

Unknown

 PROTEIN KINASE-RELATED
AT2G35390

Predicted

Affinity Capture-MS

FSW = 0.0281

Unknown

 RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G47090

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.0840

Unknown

 NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G06483

Predicted

Phenotypic Enhancement

FSW = 0.0941

Unknown

 PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT3G11230

Predicted

Phenotypic Enhancement

FSW = 0.0985

Unknown

 YIPPEE FAMILY PROTEIN
AT4G22140

Predicted

Synthetic Lethality

FSW = 0.0191

Unknown

 DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G32530

Predicted

Phenotypic Enhancement

FSW = 0.0124

Unknown

 VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE
AT4G33070

Predicted

Affinity Capture-MS

FSW = 0.0030

Unknown

 PYRUVATE DECARBOXYLASE PUTATIVE
AT5G49970

Predicted

Phenotypic Enhancement

FSW = 0.1148

Unknown

 ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G63650

Predicted

two hybrid

FSW = 0.0666

Unknown

 SNRK25 (SNF1-RELATED PROTEIN KINASE 25) KINASE
AT5G64760

Predicted

Phenotypic Enhancement

FSW = 0.1174

Unknown

 RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)
AT4G03430

Predicted

Affinity Capture-MS

FSW = 0.0429

Unknown

 EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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