Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G76400 - ( ribophorin I family protein )
51 Proteins interacs with AT1G76400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66680 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-purificationCo-expression | FSW = 0.1899
| Class C:endoplasmic reticulum | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT4G01320 | Predictedinterologs mapping | FSW = 0.0426
| Class C:endoplasmic reticulum | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT5G63840 | Predictedinterologs mappingCo-expression | FSW = 0.0373
| Class C:endoplasmic reticulum | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT1G34130 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1644
| Class C:endoplasmic reticulum | STT3B (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B) OLIGOSACCHARYL TRANSFERASE |
AT3G55360 | Predictedtwo hybrid | FSW = 0.0126
| Class C:endoplasmic reticulum | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT2G17520 | Predictedinterologs mapping | FSW = 0.1020
| Class C:endoplasmic reticulum | IRE1A ENDORIBONUCLEASE/ KINASE |
AT1G32210 | PredictedAffinity Capture-WesternCo-purificationCo-expression | FSW = 0.1307
| Class C:endoplasmic reticulum | ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1) |
AT2G39630 | PredictedSynthetic Lethality | FSW = 0.0738
| Class C:endoplasmic reticulum | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT1G72280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0595
| Class C:endoplasmic reticulum | AERO1 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 1) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT3G27170 | Predictedinterologs mapping | FSW = 0.0413
| Unknown | CLC-B (CHLORIDE CHANNEL B) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL |
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.0448
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT2G45200 | Predictedinterologs mapping | FSW = 0.0391
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT2G30710 | Predictedinterologs mapping | FSW = 0.0443
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT3G20390 | PredictedAffinity Capture-MS | FSW = 0.0787
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT3G54660 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE |
AT1G51040 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-Western | FSW = 0.1731
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT1G29310 | Predictedtwo hybrid | FSW = 0.0955
| Unknown | P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.1112
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT5G17310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1123
| Unknown | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
AT3G48570 | Predictedtwo hybrid | FSW = 0.0644
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT PUTATIVE |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT2G30050 | PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G30500 | PredictedAffinity Capture-MS | FSW = 0.0494
| Unknown | NF-YA7 (NUCLEAR FACTOR Y SUBUNIT A7) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
AT2G38670 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1) ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE |
AT1G34065 | PredictedAffinity Capture-MS | FSW = 0.1195
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT4G33720 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted Complex | FSW = 0.1325
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.0781
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT2G44660 | Predictedinterologs mapping | FSW = 0.0671
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT5G38460 | Predictedinterologs mapping | FSW = 0.0977
| Unknown | ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN |
AT5G38470 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0032
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G44180 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1163
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G33670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0667
| Unknown | L-GALACTOSE DEHYDROGENASE (L-GALDH) |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.0839
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G02000 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G05760 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0656
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.0547
| Unknown | HISTONE H4 |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.0347
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G29910 | PredictedAffinity Capture-MS | FSW = 0.0355
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.0319
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT2G46280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0043
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G02410 | Predictedinterologs mapping | FSW = 0.0678
| Unknown | DIE2/ALG10 FAMILY |
AT2G47760 | Predictedinterologs mapping | FSW = 0.0708
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT2G18240 | Predictedinterologs mapping | FSW = 0.1038
| Unknown | RER1 PROTEIN PUTATIVE |
AT1G16900 | Predictedinterologs mappingCo-expression | FSW = 0.0635
| Unknown | SUGAR BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G34980 | Predictedtwo hybrid | FSW = 0.0145
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454