Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G76490 - ( HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) hydroxymethylglutaryl-CoA reductase )
21 Proteins interacs with AT1G76490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66680 | Predictedtwo hybridinteraction prediction | FSW = 0.0650
| Class C:endoplasmic reticulum | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT5G23630 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0490
| Class C:endoplasmic reticulum | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT3G57220 | Predictedtwo hybrid | FSW = 0.0683
| Class C:endoplasmic reticulum | UDP-GLCNACDOLICHOL PHOSPHATE N-ACETYLGLUCOSAMINE-1-PHOSPHATE TRANSFERASE PUTATIVE |
AT5G05670 | Predictedtwo hybrid | FSW = 0.0985
| Class C:endoplasmic reticulum | SIGNAL RECOGNITION PARTICLE BINDING |
AT2G17520 | Predictedtwo hybrid | FSW = 0.0704
| Class C:endoplasmic reticulum | IRE1A ENDORIBONUCLEASE/ KINASE |
AT5G24360 | Predictedinteraction prediction | FSW = 0.0443
| Class C:endoplasmic reticulum | IRE1-1 (INOSITOL REQUIRING 1-1) ATP BINDING / ENDORIBONUCLEASE PRODUCING 5-PHOSPHOMONOESTERS / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G18260 | PredictedReconstituted Complexinteraction prediction | FSW = 0.2331
| Class C:endoplasmic reticulum | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0639
| Class C:endoplasmic reticulum | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT1G07420 | Predictedtwo hybridinteraction prediction | FSW = 0.1293
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT1G65040 | PredictedReconstituted Complex | FSW = 0.1146
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G05620 | Predictedtwo hybrid | FSW = 0.0190
| Unknown | GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT5G20850 | PredictedAffinity Capture-MS | FSW = 0.0034
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G09020 | PredictedPhenotypic SuppressionPhenotypic EnhancementPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0103
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT3G55380 | Predictedinterologs mapping | FSW = 0.1146
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT4G34100 | Predictedinterologs mapping | FSW = 0.2338
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT2G34770 | Predictedinterologs mappingPhenotypic EnhancementCo-expression | FSW = 0.0559
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT1G32610 | Predictedinterologs mapping | FSW = 0.0392
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT2G41490 | Predictedtwo hybridinteraction prediction | FSW = 0.0704
| Unknown | GPT (UDP-GLCNAC%3ADOLICHOL+PHOSPHATE+GLCNAC-1-P+TRANSFERASE) UDP-N-ACETYLGLUCOSAMINE-DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE |
AT2G18770 | Predictedtwo hybridinteraction prediction | FSW = 0.1231
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT1G24470 | Predictedtwo hybrid | FSW = 0.0673
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G16090 | Predictedinteraction prediction | FSW = 0.0803
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454